View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14131_low_6 (Length: 548)
Name: NF14131_low_6
Description: NF14131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14131_low_6 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: scaffold0361 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 537
Target Start/End: Complemental strand, 11487 - 10969
Alignment:
| Q |
19 |
ttgtgaggtttattattcgtactgaataacactgctcaatatttataagctgatcatcttctacattctggcaaaagtcttgagtaaattaatatcctcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11487 |
ttgtgaggtttattattcgtactgaataacactgctcaatatttataagctgatcatcttctacattctggcaaaagtcttgagtaaattaatatcctcc |
11388 |
T |
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| Q |
119 |
tatttaatccttccaattaatcaaaagatcaaagtataaaacatgattgttattcgcatgcttgaatggggaaacacatcatgaatagtggcttccattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11387 |
tatttaatccttccaattaatcaaaagatcaaagtataaaacatgattgttattcgcatgcttgcatggggaaacacatcatgaatagtggcttccattt |
11288 |
T |
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| Q |
219 |
cctggcattacttcgagtttccccgttgtggctgccatacaagtggtaaatcacgtctttcgcagctgcaactttgagggcaatcgaaaactgtcctttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11287 |
cctggcattacttcgagtttccccgttgtggctgccatacaagtggtaaatcacgtctttcgcagctgcaactttgagggcaatcgaaaactgtcctttt |
11188 |
T |
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| Q |
319 |
cccatctcatcataatctactgattagtagtttgagggtagaacaatgagattttgtaccnnnnnnnnagaaacatatagaaagttagaaacccttggtc |
418 |
Q |
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| T |
11187 |
cccatctcatcataatctactgattagtagtttgagggtagaacaatgagattttgtaccttttttttagaaacatatagaaagttagaaacccttggtc |
11088 |
T |
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| Q |
419 |
tgactctcatattcagaccccagagcccttttcttcccgagcacactgttcaccgcattgttctgcccaaaccctgtggtttccggacataacataccgc |
518 |
Q |
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| T |
11087 |
tgactctcatattcagaccccagagcccttttcttcccgagcacactgttcaccgcattgttctgcccaaaccctgtggtttccggacataacataccgc |
10988 |
T |
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| Q |
519 |
acctgcacccgcgccctat |
537 |
Q |
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| T |
10987 |
acctgcacccgcgccctat |
10969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 4946814 - 4946621
Alignment:
| Q |
22 |
tgaggtttattattcgtactgaataacactgctcaatatttataagctgatcatcttctacattctggcaaaagtcttgagtaaattaatatcctcctat |
121 |
Q |
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| T |
4946814 |
tgaggtttattattcgtactgaataacactgctcaacatttataaactgattatcttctacattctgtcaaaagttttgagtaaattaatatcctcctat |
4946715 |
T |
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| Q |
122 |
ttaatccttccaattaatcaaaagatcaaagtataaaacatgattgttattcgcatgcttgaatggggaaacacatcatgaatagtggcttcca |
215 |
Q |
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| T |
4946714 |
ttaatccttccaattaatcaaaagatcaaagtataaaacatgattgttattcgcatgcttgcatgggtaaacacatcatgaatagtggcttcca |
4946621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 206 - 347
Target Start/End: Complemental strand, 4945964 - 4945822
Alignment:
| Q |
206 |
gtggcttccatttcctggcattacttcgagtttccccgttgtggctgccatacaagtggtaaatcacgtctttcgcagctgcaactttgagggcaatcga |
305 |
Q |
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| T |
4945964 |
gtggcttccatttcctggcattacttcgagtttccc-gttgtggctgccatacaagtggtaaatcacgtcttttgcagctgcaactttgatggcaatcga |
4945866 |
T |
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| Q |
306 |
aaactgtcctttt-cccatctcatcataatc-tactgattagta |
347 |
Q |
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| T |
4945865 |
aaactgtccttttacccatctcatcataatcttactgattagta |
4945822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 4945780 - 4945708
Alignment:
| Q |
465 |
tgttcaccgcattgttctgcccaaaccctgtggtttccggacataacataccgcacctgcacccgcgccctat |
537 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||||||||||| |||||| |
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| T |
4945780 |
tgttcaccgcattgttctgcccaagccctgtggtttccgggcataacatgccacacctgcacccgcaccctat |
4945708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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