View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14131_low_7 (Length: 434)
Name: NF14131_low_7
Description: NF14131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14131_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 55223801 - 55223422
Alignment:
| Q |
1 |
taaaacttcacaaaattttacttaaaaaatatctcaaaaacacttgttaatatttc-ctggagtcaatgcataatatatgttagtttatgcaagttttcc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| | |||||||| ||||| |||||||||||||| |
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| T |
55223801 |
taaaacttcacaaaattttacttaaaaaatatctcaaaaacacttgttaacatttttctagagtcaatacgtaatatattttagtatatgcaagttttcc |
55223702 |
T |
|
| Q |
100 |
gccacc-ccaaaaagaattcttctcgcgccaaaccgaacacatagtaacaactaacaagtaacaaggcgggggtgaggnnnnnnngagacatgggatccc |
198 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
55223701 |
gccaccaccaaaaagaattcttctcgcgccaaaccgaacacata-------ccaacaagtaacaaggcgggggtgaggtttttttgagacatgggatccc |
55223609 |
T |
|
| Q |
199 |
ctggtaaaagagaaagagaaaaacacgtgtccatccacctatagtagatatttcttggaccctggcctctacactttcaccattctgctttactttttgc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55223608 |
ctggtaaaagagaaagagaaaaacacgtgtccatccacctatagtagatatttcttggaccctggcctctacactttcaccattctgctttactttttgc |
55223509 |
T |
|
| Q |
299 |
aactttttaagtaactgtgttgagcccagtggttgaatgaaagaggacgactcctgccttttcgaaaagagtgacccctcttctctttctcagca |
393 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
55223508 |
aactttttaagtaactgtgt--------gtggttgaatgaaagaggacgactcctgcctttgcgaaaagagtgacccctcttctctttctcagca |
55223422 |
T |
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