View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_high_10 (Length: 401)
Name: NF14132_high_10
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 57 - 386
Target Start/End: Original strand, 1316474 - 1316803
Alignment:
| Q |
57 |
ctaaatttaaccaagataactagtttttccagcattatctccctgcctcccgggcactctatcactcctagttgttatatttggaagcctattttcataa |
156 |
Q |
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| T |
1316474 |
ctaaatttaaccaagataactagtttttccagcattatctccctgcctcccaggcactctatcactcctagttgttatatttggaagcctattttcataa |
1316573 |
T |
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| Q |
157 |
actcaaggtcacgggaatgcctccatggtatatgccaaatcctaatccagnnnnnnnnnnnnnnnnnnnnngacacgactattccagttatttagacaag |
256 |
Q |
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| T |
1316574 |
actcaaggtcacgggaatgcctccatggtatatgccaaatcctaatccagtttttcgtcttttcttttcttgacacgactattccagttatttagacaag |
1316673 |
T |
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| Q |
257 |
tgtttattgcaaaatgattgatcgatctctcaaacagacaggaatatggttttgaatacattgctatatgccaaatccttatcgagtaatttaggaaagt |
356 |
Q |
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| T |
1316674 |
tgtttattgcaaaatgattgatcgatctctcaaacagacaggaatatggttttgaatacattgctatatgccaaatcctaatcgagtaatttaggaaagt |
1316773 |
T |
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| Q |
357 |
atttattgcaacatgaaagtagttcatggt |
386 |
Q |
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| T |
1316774 |
atttattgcaacatgaaagtagttcatggt |
1316803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1316375 - 1316434
Alignment:
| Q |
1 |
gttgacattaaaatcgaacaagctatgtaattttacataaacatattgtccagagcctaa |
60 |
Q |
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| T |
1316375 |
gttgacattaaaatcgaacaagctatgcaattttacataaacatattgtccagagcctaa |
1316434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 43486621 - 43486753
Alignment:
| Q |
75 |
actagtttttccagcattatctccctgcctcccgggc--actctatcactcctagttgttatatttggaagcctattttcataaactcaaggtcacggga |
172 |
Q |
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| T |
43486621 |
actagtttttccagcattatctccctgcctcctggtcccactctatcactcctagttgttatatttggaagcctattttcataaactcaaggtcacggga |
43486720 |
T |
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| Q |
173 |
atgcctccatggtatatgccaaatcctaatcca |
205 |
Q |
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| T |
43486721 |
atgccttcatggtatatgccaaatcctaatcca |
43486753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 303 - 372
Target Start/End: Original strand, 43486869 - 43486938
Alignment:
| Q |
303 |
tggttttgaatacattgctatatgccaaatccttatcgagtaatttaggaaagtatttattgcaacatga |
372 |
Q |
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| T |
43486869 |
tggttttgaatacattgctatatgccaaatcctaatagagtaatttaggaaagtattttgtgcaacatga |
43486938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 43486491 - 43486549
Alignment:
| Q |
2 |
ttgacattaaaatcgaacaagctatgtaattttacataaacatattgtccagagcctaa |
60 |
Q |
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|||||||||||||| ||||| | || |||||||||||||||||||||||||||||||| |
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| T |
43486491 |
ttgacattaaaatcaaacaaacattgcaattttacataaacatattgtccagagcctaa |
43486549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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