View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_high_12 (Length: 388)
Name: NF14132_high_12
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 41978330 - 41977958
Alignment:
| Q |
1 |
caaatccatttcacctaactaaactacttaaaagggtatgtaaatatgtatgaacagaggcnnnnnnnnnn-gtttgtgttcaatgttatgatgagtttt |
99 |
Q |
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| T |
41978330 |
caaatccatttcacctaactaaactacttaaaagggtatgtaactatgtatgaacagaggcaaaaaaaaaaagtttgtgttcaatgttatgatgagtttt |
41978231 |
T |
|
| Q |
100 |
gtcgatgaacagaactgatttatacgaatctttagcttaaccaactcttttgtcaatgaaaaaccaacgctttaatgttttattgacacttctattgtgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41978230 |
gtcgatgaacagaactgatttatacgaatctttagcttaaccaactcttttgtcaatgaaaaaccaacgctttaatgttttattgacacttctattgtgt |
41978131 |
T |
|
| Q |
200 |
gagtagtccatcgaacacgactttccctgaaagttaacagagaaagcaaattgagttttgtcatgaaattcaaataaatatgtaaggcagatgaatgaaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41978130 |
gagtagtccatcgaacacgactttccctgaaagttaacagagaaagcaaattgagttttgtcatgaaattcaaataaatatgtaaggcagatgaatgaaa |
41978031 |
T |
|
| Q |
300 |
caaataataaaaatattaaatcaataccttatcatatatcgcattgcatttcgtaccaagggatgatattagt |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41978030 |
caaataataaaaatattaaatcaataccttatcatatatcgcattgcatttcgtaccaagggatgatattagt |
41977958 |
T |
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