View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14132_high_14 (Length: 362)
Name: NF14132_high_14
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 34249866 - 34250206
Alignment:
| Q |
7 |
tagattattctgttagccattagtttgtgactttgtttcttggacaca-acaccagacacgatactgacacattaaggcagctaataatttgtgaaaacg |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34249866 |
tagatcattctgttagccattagtttgtgactttgtttcttggacacagacaccagacacgatactgacacattaacgcagctaataatttgtgaaaacg |
34249965 |
T |
|
| Q |
106 |
gaacaagttaaatgtaattacgtgtgctggtatcatgttggggaacaatactggctagaaattcacttcgaccttaatatttgtaatgaccgtaatgaaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34249966 |
gaacaagttaaatgtaattacgtgtgctggtatcatgttggcgaacaatactggctagaaattcacttcgaccttaatatttgtaatgaccgtaatgaaa |
34250065 |
T |
|
| Q |
206 |
ttaagttcataatatctgtatggatttgaaataccaagatgttagagatgcatttttataacacatgaacgaacttgacgaatactttgcaatttgggga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34250066 |
ttaagttcataatatctgtatggatttgaaatacgaagatgttagagatgcattttgataacacatgaacgaacttgacgaatactttgcaatttgggga |
34250165 |
T |
|
| Q |
306 |
ttattttagaattttgattatatggaggactaggttgatcc |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34250166 |
ttattttagaattttgattatatggaggactaggttgatcc |
34250206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University