View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_high_19 (Length: 322)
Name: NF14132_high_19
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 44629627 - 44629919
Alignment:
| Q |
14 |
caaaggacggtggcttggcttgttttaaagtgttatttgattcatgaaatatatactaaagtattctgtttgacttgctttggaagatgaaatctaaaat |
113 |
Q |
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| T |
44629627 |
caaaggacggtggcttggcttgttttaaagtgttaattgattcatgaaatatatactaaagtattctttttgacttgctttggaagatgaaatctaaaat |
44629726 |
T |
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| Q |
114 |
gatacagagtaatgaaatccagaagagagagattagcataannnnnnnagaggcag---cgaaatacaaaaagaaacagaagctttgatgcgttattatg |
210 |
Q |
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| T |
44629727 |
gatacagagtaatgaaatccagaagagagagattagcatattttttttagaggcagtagcgaaatacaaaaagaaacagaagctttgatgcgttattatg |
44629826 |
T |
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| Q |
211 |
tgcctatgacagtttcagagttgcaggttgaatgaagaatatttgtcttcatcatattaaattacatatgttaggactaattaaggtaatgag |
303 |
Q |
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| T |
44629827 |
tgcctatgacagtttcagagttgcaggttgaatgaagaatatttgtcttcatcatattaaattacatatgttaggactaattaaggtaatgag |
44629919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 47730012 - 47730095
Alignment:
| Q |
215 |
tatgacagtttcagagttgcaggttgaatgaagaatatttgtcttcatcatattaaattacatatgttaggactaattaaggtaatg |
301 |
Q |
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| T |
47730012 |
tatgacagtttcagagttgcaggttgaatgaa---tatttgccttcatgatatttaattatatatgttaggagtaattaaggtaatg |
47730095 |
T |
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