View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_high_25 (Length: 278)
Name: NF14132_high_25
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_high_25 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 10332716 - 10332993
Alignment:
| Q |
1 |
atcaagcttcctggtggaaagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagccaggcttg |
100 |
Q |
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| T |
10332716 |
atcaagcttcctggtggaaagaaagcaattgatttcaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagccaggcttg |
10332815 |
T |
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| Q |
101 |
tagctaaagaattcttatggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcaggttagtcattgtagtatagca |
200 |
Q |
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| T |
10332816 |
tagctaaagaattcttatggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcaggttagtcattgtagtatagca |
10332915 |
T |
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| Q |
201 |
acaagcaaagcatggctactatatcacttagatgtaaaatcagcctttctgaatcaaagggaaagaagatagagtgtt |
278 |
Q |
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| T |
10332916 |
acaagcaaagcatggctactatatcacttagatgtaaaatcagcctttctgaatcaaagggaaagaagatagagtgtt |
10332993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 6372642 - 6372497
Alignment:
| Q |
17 |
gaaagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagccaggcttgtagctaaagaattctt |
116 |
Q |
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| T |
6372642 |
gaaagaaagcaatagatgtcaaatgggtcttcaagtttaaattgaaccctgacgggaagattgtgaatcaaaaagcaagacttgtggctagaggtttctt |
6372543 |
T |
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| Q |
117 |
atggaaggaaggatttaactatactaaagttttctcaccagttgca |
162 |
Q |
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| T |
6372542 |
atagaatgaaggctttgattacactgaagttttctcaccaattgca |
6372497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 14639725 - 14639885
Alignment:
| Q |
19 |
aagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagccaggcttgtagctaaagaattcttat |
118 |
Q |
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||||||||||| ||| | |||||||| |||||| |||||||||| | ||||||||||||||||||||||||||| || ||||| |||| || ||||| |
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| T |
14639725 |
aagaaagcaatagatgttaaatgggtctttaagttgaaattgaatcctgaagggaagattgtgaagcacaaagctagacttgtggctagagttttcttga |
14639824 |
T |
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| Q |
119 |
ggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcag |
179 |
Q |
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| T |
14639825 |
agaaggaaggctttgattatactgaagtgttctcaccagttccaagacatgaaaccatcag |
14639885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 12196646 - 12196483
Alignment:
| Q |
15 |
tggaaagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagccaggcttgtagctaaagaattc |
114 |
Q |
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|||||| || ||||| ||| |||||| |||||| ||| | ||||| || | ||||||||||||||||| ||| |||| |||||| | |||| || || |
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| T |
12196646 |
tggaaaaaaggcaatagatataaaattggttttcaagttaaaatttaatcaagaagggaagattgtgaatcacgaagcaaggcttttggctagaggttta |
12196547 |
T |
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| Q |
115 |
ttatggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcag |
179 |
Q |
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| T |
12196546 |
tt-tagaaggaaggttttgattacactaaagttttctcaccagatgcaagacatgaaactatcag |
12196483 |
T |
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