View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_high_27 (Length: 259)
Name: NF14132_high_27
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 35674559 - 35674416
Alignment:
| Q |
14 |
agagggttaacctaatagggtatgtatatgcaaaaatgaggcctattagtcaaggaagtgtgaactataacaggagatccttatagagcaaaatgggtcc |
113 |
Q |
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| T |
35674559 |
agagggttaacctaatagggtctgtatatgcaaaaatgaggcctattagtcaaggaagtgtgaactataacaggagatccttatagagcaaaatgggtcc |
35674460 |
T |
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| Q |
114 |
attctaatttaaacaatgtattgtcatccaagttatttttagag |
157 |
Q |
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| T |
35674459 |
attctaatttaaacaatgtattatcatccaagttatttttagag |
35674416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 35674374 - 35674283
Alignment:
| Q |
157 |
ggctattgcaatttgtgtttacacacattaaaggatctacaatatcagtataataatccagtggtgatacattgacaaccaaaggtgacaca |
248 |
Q |
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| T |
35674374 |
ggctattgcaatttgtgtttacacacattaaagggtctacaatatcagtataataatccagtggtgatacattgacaaccaaaggtgacaca |
35674283 |
T |
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