View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14132_high_9 (Length: 451)

Name: NF14132_high_9
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14132_high_9
NF14132_high_9
[»] chr2 (8 HSPs)
chr2 (13-437)||(34101908-34102332)
chr2 (241-335)||(33941901-33941995)
chr2 (276-335)||(9477944-9478003)
chr2 (253-335)||(43984999-43985081)
chr2 (241-318)||(34652020-34652097)
chr2 (275-335)||(1810657-1810716)
chr2 (248-320)||(1939323-1939395)
chr2 (238-278)||(3070511-3070551)
[»] chr4 (7 HSPs)
chr4 (241-334)||(2996566-2996659)
chr4 (249-327)||(6987733-6987811)
chr4 (245-313)||(488114-488182)
chr4 (250-334)||(11264294-11264378)
chr4 (238-278)||(17976804-17976844)
chr4 (275-323)||(30668384-30668432)
chr4 (266-334)||(36722678-36722746)
[»] chr5 (1 HSPs)
chr5 (238-323)||(40205055-40205140)
[»] chr1 (5 HSPs)
chr1 (241-335)||(51695478-51695573)
chr1 (238-335)||(15515533-15515630)
chr1 (247-334)||(5756676-5756763)
chr1 (247-323)||(15437967-15438043)
chr1 (241-313)||(35925704-35925776)
[»] chr6 (5 HSPs)
chr6 (241-335)||(20368164-20368258)
chr6 (247-318)||(7148675-7148746)
chr6 (188-230)||(733100-733142)
chr6 (246-323)||(8035137-8035214)
chr6 (241-285)||(8147050-8147094)
[»] chr8 (2 HSPs)
chr8 (238-334)||(11415147-11415243)
chr8 (253-320)||(20672757-20672824)
[»] chr3 (1 HSPs)
chr3 (246-287)||(38319000-38319041)


Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Complemental strand, 34102332 - 34101908
Alignment:
Q  13 aatatgtagaacagtagaacgcctatcaaatgatcatataatcataaataaccaatcaacaacactaaatctgttccaattataacataatctcagaatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102332 aatatgtagaacagtagaacgcctatcaaatgatcatataatcataaataaccaatcaacaacactaaatctgttccaattataacataatctcagaatc 34102233  T
Q  113 atattctacaaaaattaccaaaatcaaaacctaaatctatttaaagaagtaattactagtgtttatggcttgtttgaaattagttaatttgagcttatct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34102232 atattctacaaaaattaccaaaatcaaaacctaaatctatttaaagaagtaattactagtgtttatggcttgtttgaaattagttaatttgagcttacct 34102133  T
Q  213 actgccataagcacttatcagagtcagtttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagctta 312  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34102132 actgccataagcacttatcagagtcagtttataaaaacagcttataacatgtacatactctattttcaacttattctcgtaaactatccaggatagctta 34102033  T
Q  313 taaaaacaactaataacttatacnnnnnnncgtttgactttattttatctcataggaatagcttatacataagcacttatgctgatctctcactatccca 412  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102032 taaaaacaactaataacttatacaaaaaaacgtttgactttattttatctcataggaatagcttatacataagcacttatgctgatctctcactatccca 34101933  T
Q  413 attccattaacaaacagctaaaatg 437  Q
    |||||||||||||||||||||||||    
T  34101932 attccattaacaaacagctaaaatg 34101908  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 335
Target Start/End: Complemental strand, 33941995 - 33941901
Alignment:
Q  241 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 335  Q
    |||| |||||||||||| ||| || ||||| ||  |||||||||||| || |||||| |||| |||||||||| ||||||| | |||||||||||    
T  33941995 ttatgaaaacaacttatgacaagttcataagctgctttcaacttattatcataaactctccaagatagcttatgaaaacaagttataacttatac 33941901  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 9478003 - 9477944
Alignment:
Q  276 tttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 335  Q
    |||||||||||| || ||| || ||||||||||||||| ||||||||| |||||||||||    
T  9478003 tttcaacttattttcataacctctccaggatagcttatgaaaacaacttataacttatac 9477944  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 43984999 - 43985081
Alignment:
Q  253 cttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 335  Q
    ||||||| |||| ||| ||||||||||| |||||| || ||| || | || |||||||||| ||||||||| |||| ||||||    
T  43984999 cttataatatgttcattatctattttcagcttattttcataagctcttcaagatagcttatgaaaacaacttataatttatac 43985081  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 34652020 - 34652097
Alignment:
Q  241 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaa 318  Q
    ||||| ||||||||||| |||||| ||||| || |||||||||||||  | ||| || |||| |||||||||| ||||    
T  34652020 ttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 1810716 - 1810657
Alignment:
Q  275 ttttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 335  Q
    |||||| |||||| || |||||| | || |||||||||||||||||||| |||||||||||    
T  1810716 ttttcagcttattttcataaactcttcaagatagcttataaaaacaact-ataacttatac 1810657  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 1939323 - 1939395
Alignment:
Q  248 aacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaaca 320  Q
    |||||||||| |||||| ||||| || |||||||||||||  | ||| || ||||| ||||||||| ||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaaca 1939395  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 3070511 - 3070551
Alignment:
Q  238 agtttataaaaacaacttataacatgtacataatctatttt 278  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  3070511 agtttataaaaacaacttataacatgtctataaactatttt 3070551  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 2996659 - 2996566
Alignment:
Q  241 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 334  Q
    |||| |||||||||||| |||||| ||||| || ||||||||||||| || ||  || |||| |||||||||| ||||||||| ||||||||||    
T  2996659 ttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataacttata 2996566  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 6987733 - 6987811
Alignment:
Q  249 acaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaata 327  Q
    ||||||||| |||||| ||||| ||||||||||||||||  | ||| || ||||||||||| || ||||| ||||||||    
T  6987733 acaacttatgacatgtccataaactattttcaacttatttccataagctctccaggatagcgtaaaaaaataactaata 6987811  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 488114 - 488182
Alignment:
Q  245 aaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttat 313  Q
    ||||||||||||| |||||| ||||| || |||||| ||||||  |||||| | |||| ||||||||||    
T  488114 aaaaacaacttatgacatgtgcataagctgttttcatcttatttacgtaaattctccaagatagcttat 488182  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 11264378 - 11264294
Alignment:
Q  250 caacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 334  Q
    |||||||| |||||| ||||| || |||||||||||||  | ||| || || ||||| |||||| ||||||||| ||||| ||||    
T  11264378 caacttatgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaacttataacatata 11264294  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 17976844 - 17976804
Alignment:
Q  238 agtttataaaaacaacttataacatgtacataatctatttt 278  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  17976844 agtttataaaaacaacttataacatgtctataaactatttt 17976804  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 30668384 - 30668432
Alignment:
Q  275 ttttcaacttattctcgtaaactatccaggatagcttataaaaacaact 323  Q
    |||||| |||| | || ||||||||||| ||||||||||||||||||||    
T  30668384 ttttcagcttaatttcataaactatccaagatagcttataaaaacaact 30668432  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 36722678 - 36722746
Alignment:
Q  266 cataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 334  Q
    ||||||||||||| | |||||| || ||| || | ||||||| ||||| ||||||||| ||||||||||    
T  36722678 cataatctattttaagcttattttcataagctcttcaggataacttatcaaaacaacttataacttata 36722746  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 323
Target Start/End: Original strand, 40205055 - 40205140
Alignment:
Q  238 agtttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaact 323  Q
    |||||||| ||||| |||||||||||| |||||||| |||||| ||||||    ||| || ||||||||||||||| |||||||||    
T  40205055 agtttatataaacagcttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaact 40205140  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 51695478 - 51695573
Alignment:
Q  241 ttataaaaacaacttataacat-gtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 335  Q
    ||||| ||||||||||| |||| || ||||| ||||||||| |||||| || |||| | |||| |||||||||| |||||| || |||||||||||    
T  51695478 ttatataaacaacttatcacattgttcataagctattttcagcttattttcataaattctccaagatagcttatgaaaacatctgataacttatac 51695573  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 15515630 - 15515533
Alignment:
Q  238 agtttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 335  Q
    ||||||| |||||||||||| ||||||  |||  |||||||||| |||||  | ||| ||||||| |||| ||||| ||||||||| ||| |||||||    
T  15515630 agtttatgaaaacaacttatgacatgtcaatacgctattttcaatttatttccataagctatccatgataacttatgaaaacaacttatagcttatac 15515533  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 334
Target Start/End: Original strand, 5756676 - 5756763
Alignment:
Q  247 aaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 334  Q
    ||||| ||||||| ||||| ||||  ||||||||||||||| | |||| || |||||| |||||||  ||||||||| |||| |||||    
T  5756676 aaacaccttataatatgtatataagatattttcaacttattttggtaagctctccaggctagcttacgaaaacaacttataatttata 5756763  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 15438043 - 15437967
Alignment:
Q  247 aaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaact 323  Q
    ||||||||||| |||||| |||||  || ||||| ||||||  |||||||| || |||||||| ||| |||||||||    
T  15438043 aaacaacttatgacatgttcataagttactttcagcttatttccgtaaactctcgaggatagcctatgaaaacaact 15437967  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 35925776 - 35925704
Alignment:
Q  241 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttat 313  Q
    |||| |||||| ||||| |||||| ||||| || |||||||||||||  | |||||| |||| ||||||||||    
T  35925776 ttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttat 35925704  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 20368164 - 20368258
Alignment:
Q  241 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 335  Q
    |||| |||||||||||| |||||| ||||| ||| |||||||||||| || |||  | |||| || ||||||| ||||||||| |||||| ||||    
T  20368164 ttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataagttctccaagaaagcttatgaaaacaacttataactcatac 20368258  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 7148746 - 7148675
Alignment:
Q  247 aaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaa 318  Q
    ||||||||||| || ||| ||||| |||||||||||||||| || ||| || |||||| |||||||| ||||    
T  7148746 aaacaacttatgacttgtccataagctattttcaacttattttcataagctctccagggtagcttattaaaa 7148675  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 733100 - 733142
Alignment:
Q  188 gaaattagttaatttgagcttatctactgccataagcacttat 230  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||    
T  733100 gaaattggtttatttgagcttatctactaccataagcacttat 733142  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 8035137 - 8035214
Alignment:
Q  246 aaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaact 323  Q
    |||||||||||| |||||  |||||  | ||||||||||||| |||||| || || |||||| ||||| |||||||||    
T  8035137 aaaacaacttatgacatggtcataacttgttttcaacttattttcgtaagctttctaggataacttatgaaaacaact 8035214  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 8147050 - 8147094
Alignment:
Q  241 ttataaaaacaacttataacatgtacataatctattttcaactta 285  Q
    |||| ||||||||||||||||| | ||||| ||||||||||||||    
T  8147050 ttatgaaaacaacttataacatatgcataagctattttcaactta 8147094  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 11415243 - 11415147
Alignment:
Q  238 agtttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 334  Q
    |||||||  ||||| |||||||||||| ||||| ||||| ||| |||||| ||  ||||| || |||||||||||| |||||| |  ||||||||||    
T  11415243 agtttatggaaacagcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagcttatgaaaacagcgtataacttata 11415147  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 20672824 - 20672757
Alignment:
Q  253 cttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaaca 320  Q
    ||||| |||||| ||||| || |||||| |||||| || ||| || ||||||||||||||||||||||    
T  20672824 cttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaaca 20672757  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 38319041 - 38319000
Alignment:
Q  246 aaaacaacttataacatgtacataatctattttcaacttatt 287  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    
T  38319041 aaaacaacttataacatgttcataagctattttcagcttatt 38319000  T

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