View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_low_1 (Length: 775)
Name: NF14132_low_1
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 683; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 1 - 759
Target Start/End: Complemental strand, 16690835 - 16690077
Alignment:
| Q |
1 |
gatttttgtttttcaaacttgttagctttcaagagattgtccctttgaatgctggaaatgtgcttgtattagaggacaatgaacctgctgcgaaatggct |
100 |
Q |
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| T |
16690835 |
gatttttgtttttcaaacttgttagctttcaagagattgtccctttgaatgctggaaatgtgcttgtattagaggacaatgaacctgctgcgaaatggct |
16690736 |
T |
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| Q |
101 |
tgccttaatcaatcaatcactcaatggtccttcagatttctcttctaataaagggctaaaacctactgcatcattcggcgggtcattgtacttccaaaag |
200 |
Q |
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| T |
16690735 |
tgccttaatcaatcaatcactcaatggtccttcagatttctcttcaaataaagggctaaaacccactgcatcattcggtgggtcattgtacttccaaaag |
16690636 |
T |
|
| Q |
201 |
ccttctctaaagaagatcaagaaaactttcaagaaattaaacggaaagaggctaaaaagttgtaactgcgtacttgaaatggaaaggaaggctgctaagg |
300 |
Q |
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| T |
16690635 |
ccttctctaaagaagatcaagaaaactttcaagaaattaaacggaaagaggctgaaaagttgtaactgcatacttgaaatggaaaggaaggctgctaagg |
16690536 |
T |
|
| Q |
301 |
atttttgttttcgttgccaagaatcaaatgtaaatttagacgattcttcgacagaagaggaagatgacagttatccgatttccgtcgctttggctactaa |
400 |
Q |
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| T |
16690535 |
atttttgttttcgttgccaagaatcaaatgtaaatttagacgattcttcgacagaagaggaagatgacagttatccgatttccgttgctttggctactaa |
16690436 |
T |
|
| Q |
401 |
tcagatgaaatacagtcttgttacttgtaagcaaatggttggaatttttgttagtgtatggatgaagaaggaacttattcaatatgtaggacatttaaga |
500 |
Q |
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| T |
16690435 |
tcaaatgaaatacagtcttgttacttgtaagcaaatggttggaatttttgttagtgtatggatgaagaaggaacttattcaatatgtaggacatttaaga |
16690336 |
T |
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| Q |
501 |
atatgttgcactagtcgcggtatcatgggatgcctcggaaacaaggtagttaaaataaagctttattcttttctgtttctcttttaatgcaagtgtttat |
600 |
Q |
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| T |
16690335 |
atatgttgcactagtcgcggtatcatgggatgcctcggaaacaaggtagttaaaataaagcttttttcttttctgtttctcttttaatgctagtgtttat |
16690236 |
T |
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| Q |
601 |
gcactataatgtatcaatgaaaaacaattgtttaacacaagtgctaccaatttcttttatggtgccgcaggggtgtatatctgtgagcatgtcattttat |
700 |
Q |
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| T |
16690235 |
gagctataaagcatcaatgaaaaacaatactttaacacaagtgttaccaattgtttttatggtgctgcaggggtgtatatctgtgagcatgtcattttat |
16690136 |
T |
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| Q |
701 |
cagacaagtttttgctttatctgtagtcatctggcgtcgggagaaaaagagggtgatga |
759 |
Q |
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| T |
16690135 |
cagacaagtttttgctttatctgtagtcatctggcgtcgggagaaaaagagggtgatga |
16690077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 34469387 - 34469467
Alignment:
| Q |
210 |
aagaagatcaagaaaactttcaagaaattaaacggaaagaggctaaaaagttgtaactgcgtacttgaaatggaaaggaagg |
291 |
Q |
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|||||||| |||||| ||||||||||| | | ||||| |||||||| |||||||||| || || |||||||||||||||| |
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| T |
34469387 |
aagaagat-aagaaagctttcaagaaagtgagtggaaaaaggctaaatagttgtaactatgttctagaaatggaaaggaagg |
34469467 |
T |
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