View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14132_low_15 (Length: 371)

Name: NF14132_low_15
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14132_low_15
NF14132_low_15
[»] chr4 (16 HSPs)
chr4 (169-289)||(55321757-55321876)
chr4 (1-95)||(55321315-55321409)
chr4 (266-355)||(56226466-56226555)
chr4 (317-355)||(14527582-14527620)
chr4 (317-355)||(18363659-18363697)
chr4 (313-355)||(20143283-20143325)
chr4 (317-355)||(24666133-24666171)
chr4 (313-355)||(26393400-26393442)
chr4 (317-355)||(36599231-36599269)
chr4 (317-354)||(34450820-34450857)
chr4 (322-355)||(34941506-34941539)
chr4 (317-354)||(45393986-45394023)
chr4 (317-354)||(47156638-47156675)
chr4 (317-354)||(47157385-47157422)
chr4 (286-355)||(56227030-56227099)
chr4 (317-353)||(26354238-26354274)
[»] chr5 (12 HSPs)
chr5 (262-355)||(29595545-29595638)
chr5 (265-355)||(29594910-29595000)
chr5 (265-308)||(7806475-7806518)
chr5 (289-355)||(27345897-27345963)
chr5 (317-355)||(2029053-2029091)
chr5 (317-355)||(23253492-23253530)
chr5 (317-355)||(24565577-24565615)
chr5 (317-355)||(24606613-24606651)
chr5 (317-355)||(35524883-35524921)
chr5 (317-355)||(39937912-39937950)
chr5 (317-355)||(40372166-40372204)
chr5 (317-354)||(39466890-39466927)
[»] chr8 (12 HSPs)
chr8 (262-355)||(33321501-33321594)
chr8 (265-355)||(33322157-33322247)
chr8 (313-355)||(16911048-16911090)
chr8 (317-355)||(4402293-4402331)
chr8 (317-355)||(22632326-22632364)
chr8 (317-355)||(22632974-22633012)
chr8 (317-355)||(26847101-26847139)
chr8 (317-355)||(42094013-42094051)
chr8 (317-355)||(42663281-42663319)
chr8 (317-354)||(202582-202619)
chr8 (317-354)||(317419-317456)
chr8 (317-354)||(36180692-36180729)
[»] chr7 (12 HSPs)
chr7 (262-355)||(3314959-3315052)
chr7 (265-355)||(3315417-3315507)
chr7 (317-355)||(36611500-36611538)
chr7 (317-354)||(36611556-36611593)
chr7 (317-354)||(42818559-42818596)
chr7 (320-355)||(30580639-30580674)
chr7 (317-355)||(767140-767178)
chr7 (317-355)||(17114149-17114187)
chr7 (317-355)||(41965783-41965821)
chr7 (317-355)||(46491694-46491732)
chr7 (321-354)||(30581276-30581309)
chr7 (317-353)||(7329074-7329110)
[»] chr3 (16 HSPs)
chr3 (266-355)||(54308457-54308546)
chr3 (313-355)||(20807941-20807983)
chr3 (286-354)||(18745345-18745413)
chr3 (313-355)||(4706958-4707000)
chr3 (313-355)||(20808609-20808651)
chr3 (323-356)||(43479523-43479556)
chr3 (313-356)||(33762690-33762733)
chr3 (317-355)||(9830576-9830614)
chr3 (317-355)||(15287571-15287609)
chr3 (317-355)||(47571200-47571238)
chr3 (317-355)||(49349680-49349718)
chr3 (317-355)||(49350276-49350314)
chr3 (313-355)||(54751800-54751842)
chr3 (317-354)||(29516555-29516592)
chr3 (317-354)||(47571945-47571982)
chr3 (286-354)||(18744625-18744693)
[»] chr1 (13 HSPs)
chr1 (271-356)||(32772103-32772188)
chr1 (265-347)||(11937711-11937795)
chr1 (279-355)||(27745560-27745636)
chr1 (317-355)||(16449559-16449597)
chr1 (317-355)||(16459133-16459171)
chr1 (313-355)||(24847787-24847829)
chr1 (313-355)||(24848428-24848470)
chr1 (317-355)||(26240877-26240915)
chr1 (313-356)||(2260856-2260899)
chr1 (318-357)||(14166914-14166953)
chr1 (317-355)||(26240118-26240156)
chr1 (313-353)||(16450467-16450507)
chr1 (313-353)||(16460043-16460083)
[»] chr6 (2 HSPs)
chr6 (313-354)||(13084881-13084922)
chr6 (265-308)||(8555064-8555107)
[»] chr2 (5 HSPs)
chr2 (317-354)||(20606927-20606964)
chr2 (320-356)||(30514551-30514587)
chr2 (317-355)||(127741-127779)
chr2 (320-354)||(44297423-44297457)
chr2 (317-355)||(44987545-44987583)
[»] scaffold0627 (1 HSPs)
scaffold0627 (320-353)||(6470-6503)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 55321757 - 55321876
Alignment:
Q  169 caattcaagatagatatttcatttatcttcttctcgaactcctgaatttgtacaaaagaacaattataaatttgaataaccataatacttttatataaat 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  55321757 caattcaagatagatatttcatttatcttcttctcgaactcctgaatttgtacaaaagaacaattataaatttgaataaccataatac-tttatataaat 55321855  T
Q  269 aatgagatcttatagtcttat 289  Q
    |||||||||||||||||||||    
T  55321856 aatgagatcttatagtcttat 55321876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 55321315 - 55321409
Alignment:
Q  1 agaaagattagacattcaaaattcatttaccttattgtgcaaggataactgacttgagatcattcactaattcctaccctgattgcatgtttaac 95  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55321315 agaaagattagacattcaaaattaatttaccttattgtgcaaggataactgacttgagatcattcactaattcctgccctgattgcatgtttaac 55321409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 355
Target Start/End: Complemental strand, 56226555 - 56226466
Alignment:
Q  266 aataatgagatcttatagtcttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||| ||||| ||| |||||||| |||| |||||| |||||||  |||||| ||||||||||||||||||| |||||| | |||||||    
T  56226555 aataattagatcctatggtcttattaaatctaatggttaaataaagtggtacatcggtgagagacttaattgatccctcatcttagaatc 56226466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 14527582 - 14527620
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  14527582 caccggtgagggacttaattgatccctcaccctagaatc 14527620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 18363659 - 18363697
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  18363659 caccggtgaggaacttaattgaaccctcaccctagaatc 18363697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 20143325 - 20143283
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||||||| |||||| |||| ||||||||||||||||    
T  20143325 ggtacaccggtgagggacttagttgagccctcaccctagaatc 20143283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 24666171 - 24666133
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  24666171 caccggtgagggacttaattgatccctcaccctagaatc 24666133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 26393400 - 26393442
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||||||| |||||||| || ||||||||||||||||    
T  26393400 ggtacaccggtgagggacttaatagagccctcaccctagaatc 26393442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 36599269 - 36599231
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  36599269 caccggtgaggaacttaattgaaccctcaccctagaatc 36599231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 34450857 - 34450820
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  34450857 caccggtgagggacttaattgatccctcaccctagaat 34450820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 34941539 - 34941506
Alignment:
Q  322 gtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||| ||||||||||||||||||||||||||||    
T  34941539 gtgagggacttaattgaaccctcaccctagaatc 34941506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 45394023 - 45393986
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  45394023 caccggtaagagacttaattgaaccctcactctagaat 45393986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 47156675 - 47156638
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  47156675 caccgatgagggacttaattgaaccctcaccctagaat 47156638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 47157385 - 47157422
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| || ||||||||||||||||||||||||    
T  47157385 caccggtgagggatttaattgaaccctcaccctagaat 47157422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 56227030 - 56227099
Alignment:
Q  286 ttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||| ||||||| ||| |||||||  |||||||||||||  ||||| ||||| ||||||| ||||||||    
T  56227030 ttattaaatccaacggttaaataaagtggtacaccggtgaaggacttcattgagccctcactctagaatc 56227099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 26354238 - 26354274
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaa 353  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  26354238 cacctgtgagggacttaattgaaccctcaccctagaa 26354274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 262 - 355
Target Start/End: Original strand, 29595545 - 29595638
Alignment:
Q  262 tataaataatgagatcttatagtcttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||    
T  29595545 tataaataatgagatcttatagtcttatttaatctaatggtcaaataaactggtacactggtgagggacttaattgaaccctcacgctagaatc 29595638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 29595000 - 29594910
Alignment:
Q  265 aaataatgagatcttatagtcttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| || ||| ||||||||||||||||||  ||||||||  |||||| ||||||   |||||||||||||||||||||||||||    
T  29595000 aaataatgagttcatatggtcttatttaatccaatgaccaaataaagtggtacatcggtgaagaacttaattgaaccctcaccctagaatc 29594910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 7806518 - 7806475
Alignment:
Q  265 aaataatgagatcttatagtcttatttaatccaatggtcaaata 308  Q
    |||||| |||||| ||||||||||||||||||||||||||||||    
T  7806518 aaataaggagatcctatagtcttatttaatccaatggtcaaata 7806475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 27345897 - 27345963
Alignment:
Q  289 tttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||||| |||||  ||  |||| | ||||||| ||||||||||||||||||||||||||||    
T  27345897 tttaatccaatgatcaaaataagtggtatatcggtgagggacttaattgaaccctcaccctagaatc 27345963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 2029053 - 2029091
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  2029053 caccggtgagggacttaattgagccctcaccctagaatc 2029091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 23253492 - 23253530
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  23253492 caccggtgagggacttaattggaccctcaccctagaatc 23253530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 24565615 - 24565577
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| || |||||||||||||||||||||||||    
T  24565615 caccggtgagggatttaattgaaccctcaccctagaatc 24565577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 24606651 - 24606613
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| || |||||||||||||||||||||||||    
T  24606651 caccggtgagggatttaattgaaccctcaccctagaatc 24606613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 35524883 - 35524921
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  35524883 caccggtgagaaacttaattgatccctcaccctagaatc 35524921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 39937912 - 39937950
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  39937912 caccggtgagggacttaactgaaccctcaccctagaatc 39937950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 40372166 - 40372204
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  40372166 caccggtgaggaacttaattgaaccctcaccctagaatc 40372204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 39466927 - 39466890
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  39466927 caccggtgagggacttaattggaccctcaccctagaat 39466890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 33321594 - 33321501
Alignment:
Q  262 tataaataatgagatcttatagtcttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||| |||||||||||||| ||||| |||||||    
T  33321594 tataaataatgagatcttatagtcttatttaatccaatggtcaaataaattggtacatcagtgagggacttaattgaaccatcaccttagaatc 33321501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 355
Target Start/End: Original strand, 33322157 - 33322247
Alignment:
Q  265 aaataatgagatcttatagtcttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| || |||  |||||||||||||||||||||||||||   ||||||  ||||| ||  |||||||||||||| |||||||||    
T  33322157 aaataatgagttcatatgttcttatttaatccaatggtcaaataaagttgtacacatgtgagggatataattgaaccctcatcctagaatc 33322247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 16911048 - 16911090
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||||||| ||||||||||| ||||||||||||||||    
T  16911048 ggtacaccggtgagggacttaattgagccctcaccctagaatc 16911090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 4402293 - 4402331
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  4402293 caccggtgagggacttaatagaaccctcaccctagaatc 4402331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 22632364 - 22632326
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  22632364 caccggtgagggacttaattgatccctcaccctagaatc 22632326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 22632974 - 22633012
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  22632974 caccggtgagggacttaattgatccctcaccctagaatc 22633012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 26847139 - 26847101
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  26847139 caccggtgagggacttaattggaccctcaccctagaatc 26847101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 42094051 - 42094013
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  42094051 caccggtgagggacttaattgatccctcaccctagaatc 42094013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 42663319 - 42663281
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  42663319 caccggtgagagacttaattggactctcaccctagaatc 42663281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 202619 - 202582
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  202619 caccggtgagggacttaattgaaccctcatcctagaat 202582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 317456 - 317419
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  317456 caccggtgagggacttaattgaaccctcatcctagaat 317419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 36180729 - 36180692
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  36180729 caccggtgagggacttaattaaaccctcaccctagaat 36180692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 3315052 - 3314959
Alignment:
Q  262 tataaataatgagatcttatagtcttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||||||||  ||| || | ||||||||||||||| |||||||  |||||||||||||| |||||||||||||||||||| |||||||    
T  3315052 tataaataatgagatagtatggtttcatttaatccaatggttaaataaagtggtacaccggtgagggacttaattgaaccctcaccgtagaatc 3314959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 355
Target Start/End: Original strand, 3315417 - 3315507
Alignment:
Q  265 aaataatgagatcttatagtcttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| || ||| |||||||||||||| ||||| |||| ||  | || ||||||||| ||||||||||| |||||||| |||||||    
T  3315417 aaataatgagttcatatggtcttatttaatccgatggttaaattaagtgttataccggtgagggacttaattgagccctcaccttagaatc 3315507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 36611500 - 36611538
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  36611500 caccggtgagagatttaattgaaccctcaccctagaatc 36611538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 36611593 - 36611556
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| |||||||||||||||||||||||||||    
T  36611593 caccggtgagggacttaattgaaccctcaccctagaat 36611556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 42818559 - 42818596
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| |||||||||||||||||||||||||||    
T  42818559 caccggtgagggacttaattgaaccctcaccctagaat 42818596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 355
Target Start/End: Complemental strand, 30580674 - 30580639
Alignment:
Q  320 cggtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||||||||||||||| ||||||||||||||||||    
T  30580674 cggtgagagacttaattaaaccctcaccctagaatc 30580639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 767178 - 767140
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  767178 caccggtgagggacttaattggaccctcaccctagaatc 767140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 17114187 - 17114149
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  17114187 caccgatgagggacttaattgaaccctcaccctagaatc 17114149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 41965783 - 41965821
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  41965783 caccggtgagggacttaattggaccctcaccctagaatc 41965821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 46491694 - 46491732
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  46491694 caccggtgagggacttagttgaaccctcaccctagaatc 46491732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 30581276 - 30581309
Alignment:
Q  321 ggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||| |||||||||||||||||||||||||||    
T  30581276 ggtgagggacttaattgaaccctcaccctagaat 30581309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 7329074 - 7329110
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaa 353  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  7329074 caccagtgagggacttaattgaaccctcaccctagaa 7329110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 355
Target Start/End: Complemental strand, 54308546 - 54308457
Alignment:
Q  266 aataatgagatcttatagtcttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||||||||||  ||||  |||||||||| || |||||||  ||  ||| |||||||||| ||||||||||||||||||||||||||||    
T  54308546 aataatgagatcaaataggattatttaatctaacggtcaaaataagtggttcaccggtgagggacttaattgaaccctcaccctagaatc 54308457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 20807983 - 20807941
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  20807983 ggtacaccggtgagggacttaattgaaccctcaccctagaatc 20807941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 18745345 - 18745413
Alignment:
Q  286 ttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| |||||||||||  |  ||| |||||||||| ||||| |||||||||||||||||||||    
T  18745345 ttatttaatctaatggtcaaattcagtggtgcaccggtgagggacttgattgaaccctcaccctagaat 18745413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 4706958 - 4707000
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||||||| |||||||| |||||||||||||||||||    
T  4706958 ggtacaccggtgagggacttaatagaaccctcaccctagaatc 4707000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 20808609 - 20808651
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  20808609 ggtacaccggtgagggacttacttgaaccctcaccctagaatc 20808651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 43479523 - 43479556
Alignment:
Q  323 tgagagacttaattgaaccctcaccctagaatct 356  Q
    ||||||||||||||||||||||||||||||||||    
T  43479523 tgagagacttaattgaaccctcaccctagaatct 43479556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 33762690 - 33762733
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaatct 356  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||    
T  33762690 ggtacaccggtgagggacttaatagaaccctcaccttagaatct 33762733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 9830614 - 9830576
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  9830614 caccggtgagggacttaattgaaccctcacccgagaatc 9830576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 15287609 - 15287571
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  15287609 caccggtgagggacttaattggaccctcaccctagaatc 15287571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 47571238 - 47571200
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  47571238 caccggtgagggacttaattgatccctcaccctagaatc 47571200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 49349718 - 49349680
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  49349718 caccggtgagggacttaattgatccctcaccctagaatc 49349680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 49350276 - 49350314
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  49350276 caccggcgagggacttaattgaaccctcaccctagaatc 49350314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 54751842 - 54751800
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||    
T  54751842 ggtacaccgatgagagacttatttgaaccctcatcctagaatc 54751800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 29516555 - 29516592
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  29516555 caccggtgagggacttaattgaaccctcaccgtagaat 29516592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 47571945 - 47571982
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  47571945 caccggtgagggacttaattgatccctcaccctagaat 47571982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 18744693 - 18744625
Alignment:
Q  286 ttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| |||||||||||  |  ||| |||||||||| ||||| ||| |||||||| ||||||||    
T  18744693 ttatttaatctaatggtcaaatttagtggtgcaccggtgagggacttgattaaaccctcatcctagaat 18744625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 271 - 356
Target Start/End: Complemental strand, 32772188 - 32772103
Alignment:
Q  271 tgagatcttatagtcttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaatct 356  Q
    ||||||| ||||| ||||||||||| ||||||||| ||||  |||||| ||||||| | ||||||||| |||||||| ||||||||    
T  32772188 tgagatcatatagacttatttaatctaatggtcaattaaagtggtacatcggtgaggggcttaattgagccctcaccttagaatct 32772103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 11937795 - 11937711
Alignment:
Q  265 aaataatgagatcttatagtcttatttaatccaatggtcaaataaa--cgggtacaccggtgagagacttaattgaaccctcacc 347  Q
    |||||| |||||| |||||||||||||||||||||||||||||| |    |||||||||||||| || |||||||| ||| ||||    
T  11937795 aaataaggagatcatatagtcttatttaatccaatggtcaaatatagtgtggtacaccggtgagggatttaattgagcccccacc 11937711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 355
Target Start/End: Complemental strand, 27745636 - 27745560
Alignment:
Q  279 tatagtcttatttaatccaatggtcaaataaacgggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    ||||| ||||||||||| |||| |||| ||||  |||| | ||||||| |||||||||||||||||||| |||||||    
T  27745636 tatagacttatttaatctaatgatcaattaaagtggtatatcggtgagggacttaattgaaccctcaccttagaatc 27745560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 16449597 - 16449559
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  16449597 caccggtgagggacttaattgaaccctcaccctagaatc 16449559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 16459171 - 16459133
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  16459171 caccggtgagggacttaattgaaccctcaccctagaatc 16459133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 24847829 - 24847787
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||||||| |||||||| |||||||||||||||||||    
T  24847829 ggtacaccggtgagggacttaatagaaccctcaccctagaatc 24847787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 24848428 - 24848470
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||||||| |||||||| |||||||||||||||||||    
T  24848428 ggtacaccggtgagggacttaatagaaccctcaccctagaatc 24848470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 26240877 - 26240915
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  26240877 caccggtgagggacttaattgaaccctcaccctagaatc 26240915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 2260899 - 2260856
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaatct 356  Q
    |||| ||||||||| ||||| |||||||||||||||||||||||    
T  2260899 ggtataccggtgagggacttgattgaaccctcaccctagaatct 2260856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 14166914 - 14166953
Alignment:
Q  318 accggtgagagacttaattgaaccctcaccctagaatctg 357  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  14166914 accggtgagggacttaattgagccctcaccctagaatctg 14166953  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 26240156 - 26240118
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  26240156 caccggtgagggacttaattgatccctcaccctagaatc 26240118  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 16450467 - 16450507
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaa 353  Q
    |||||||| ||||| || |||||||||||||||||||||||    
T  16450467 ggtacaccagtgagggatttaattgaaccctcaccctagaa 16450507  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 16460043 - 16460083
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaa 353  Q
    |||||||| ||||| || |||||||||||||||||||||||    
T  16460043 ggtacaccagtgagggatttaattgaaccctcaccctagaa 16460083  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 13084881 - 13084922
Alignment:
Q  313 ggtacaccggtgagagacttaattgaaccctcaccctagaat 354  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  13084881 ggtacaccggtgagagacttagttgaaccctcaccctagaat 13084922  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 8555064 - 8555107
Alignment:
Q  265 aaataatgagatcttatagtcttatttaatccaatggtcaaata 308  Q
    |||||| |||||| ||||||||||||||||||||||||||||||    
T  8555064 aaataaggagatcctatagtcttatttaatccaatggtcaaata 8555107  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 20606927 - 20606964
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaat 354  Q
    |||||||||| |||||||||||||||||||||||||||    
T  20606927 caccggtgagggacttaattgaaccctcaccctagaat 20606964  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 30514551 - 30514587
Alignment:
Q  320 cggtgagagacttaattgaaccctcaccctagaatct 356  Q
    |||||||||||||||||||| ||||||||||||||||    
T  30514551 cggtgagagacttaattgaatcctcaccctagaatct 30514587  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 127741 - 127779
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  127741 caccggtgaaggacttaattgaaccctcaccctagaatc 127779  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 44297423 - 44297457
Alignment:
Q  320 cggtgagagacttaattgaaccctcaccctagaat 354  Q
    ||||||| |||||||||||||||||||||||||||    
T  44297423 cggtgagggacttaattgaaccctcaccctagaat 44297457  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 44987545 - 44987583
Alignment:
Q  317 caccggtgagagacttaattgaaccctcaccctagaatc 355  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  44987545 caccagtgagagacttaattgatccctcaccctagaatc 44987583  T

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Target: scaffold0627 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 6503 - 6470
Alignment:
Q  320 cggtgagagacttaattgaaccctcaccctagaa 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  6503 cggtgagggacttaattgaaccctcaccctagaa 6470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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