View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_low_2 (Length: 702)
Name: NF14132_low_2
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 409 - 684
Target Start/End: Original strand, 41866389 - 41866671
Alignment:
| Q |
409 |
ctgattttgtagaagtttcttttttgggttgtggatcttggcgagcaaaagccatgaaaacaaagttgttgcgataggcaaatgtgacctttgatcagaa |
508 |
Q |
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| T |
41866389 |
ctgattttgtagaagtttcttttttgggttgttgatcttggcgagcaaaaaccatgaaaacaaagttgttgcgataggcaagtgtgacctttgatcagaa |
41866488 |
T |
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| Q |
509 |
agatg-------atatannnnnnncacttcatttgtgggcatttgaattgaattcatggagggtttctgttctttagagggaaaattgtaatgagagaga |
601 |
Q |
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| T |
41866489 |
agatgtactttgatatatttttttcacttcatttgtgggcatttgaattgaattcatggagggtttctgttctttagagggaaaattgtaatgagagaga |
41866588 |
T |
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| Q |
602 |
aggaagattgaaaattgaaggaaggtaaggagaggctgaatggaagatgatatttgatgttggagaaaaatgagtcttagagg |
684 |
Q |
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| T |
41866589 |
aggaagattgaaaattgaaggaagttagggagaggatgaatggaagatgatatttgatgttggagaaaaatgagtcttagagg |
41866671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 41866166 - 41866319
Alignment:
| Q |
13 |
agagagataaaaagatacacaaattgatttcacattggatagaatggaaaagagtaaaattcaaacgtacaaggatggtattgcaagcagttatggtatt |
112 |
Q |
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| T |
41866166 |
agagagataaaaagatacacaaactgttttcacattggatagaatggaaaagagtaaaattcaaacgtacagggatggtattgcaagcagttatggtatt |
41866265 |
T |
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| Q |
113 |
ttgttctgcatcaacaaagaggcttcaataaagaatagagataaatcaacaatc |
166 |
Q |
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| T |
41866266 |
ttgttctgcatcaacaaagaggcttcaataaagaatagagataaatcaacaatc |
41866319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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