View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14132_low_20 (Length: 324)
Name: NF14132_low_20
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 5169923 - 5169617
Alignment:
| Q |
1 |
gcgtatgtctaaaggaaagcacgatatctaggaacgaagttaaccttcatgttattagcgtgcaagtcggacgactaaattcttttggaatcttagggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5169923 |
gcgtatgtctaaaggaaagcacgatatctaggaacgaagttaaccttcatgttattagcgtgcaagtcggacgactaaattcttttggaatcttagggaa |
5169824 |
T |
|
| Q |
101 |
agtgagtttggataaggaaggactagtaataagatgagattaagcagcatgtcgcaaactagtttccgacttgatgaccgtgaagtcacaatgaagctaa |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5169823 |
agtgggtttggataaggaaggactagtaataagatgagattaagcagcatgtcgcaaactagtttccgacttgatgaccgtgaagtcacaatgaagctaa |
5169724 |
T |
|
| Q |
201 |
gctgattgtgaaattttacagtatggttggattagtatgcgtaaccgaagtatgaacattgtaactagaggatttgttttagacttgaagtgccacccgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5169723 |
gctgattgtgaaattttacagtatggttggattagtatgcgtaaccgaagtacgaacattgtaactagaggatttgttttagacttgaagtgccacccgg |
5169624 |
T |
|
| Q |
301 |
aagtaac |
307 |
Q |
| |
|
||||||| |
|
|
| T |
5169623 |
aagtaac |
5169617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 20922069 - 20922148
Alignment:
| Q |
36 |
gaagttaaccttcatgttattagcgtgcaagtcggacgactaaattcttttggaatcttagggaaagtgagtttggataa |
115 |
Q |
| |
|
||||||||||| | |||||||||| || |||||||| |||| ||||||| | ||| | |||| |||||||||||||||| |
|
|
| T |
20922069 |
gaagttaacctccttgttattagcatgtaagtcggaagacttaattcttctagaaccataggagaagtgagtttggataa |
20922148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University