View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_low_22 (Length: 319)
Name: NF14132_low_22
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 6090269 - 6090115
Alignment:
| Q |
1 |
aacacacagaacaaagatataaccggctataaccggtaactatccggtcactagaaaccctactatgtctacactttcatcctttcatagttcacacttt |
100 |
Q |
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| T |
6090269 |
aacacacagaataaagatatcaccggctataaccggtaactatccggtcactagaaaccctactatgtctacactttcatcctttcatagttcacacttt |
6090170 |
T |
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| Q |
101 |
gttttgtttccttgttccaaagaaacaataatctgaactctttgttcagactctc |
155 |
Q |
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| T |
6090169 |
gttttgtttccttgttccaaagaaacaataatctgaactctttgttcagactctc |
6090115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 6090086 - 6089989
Alignment:
| Q |
184 |
catcatcaaattctcaatcactttgacgtatcaaattttttctgtcatcataataataaacttaacatcaccattaattattataccttctttctttc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6090086 |
catcatcaaattctcaatcactttgacgtatcaaatttttgctgtcatcataataataaacttaacatcaccattaattattataccttctttctttc |
6089989 |
T |
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