View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14132_low_25 (Length: 283)

Name: NF14132_low_25
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14132_low_25
NF14132_low_25
[»] scaffold0793 (1 HSPs)
scaffold0793 (20-274)||(4922-5176)
[»] chr4 (3 HSPs)
chr4 (19-274)||(752972-753227)
chr4 (228-274)||(715646-715692)
chr4 (204-274)||(28720827-28720897)
[»] chr6 (7 HSPs)
chr6 (206-279)||(12696277-12696350)
chr6 (206-271)||(9658832-9658897)
chr6 (205-274)||(31959111-31959180)
chr6 (204-274)||(1681702-1681779)
chr6 (204-277)||(8365554-8365628)
chr6 (226-274)||(9107408-9107456)
chr6 (200-232)||(34225888-34225920)
[»] chr2 (8 HSPs)
chr2 (204-269)||(23717977-23718042)
chr2 (204-269)||(24105649-24105714)
chr2 (204-279)||(21374732-21374809)
chr2 (204-271)||(21091674-21091741)
chr2 (204-269)||(21782861-21782927)
chr2 (204-274)||(20539712-20539783)
chr2 (205-274)||(21624217-21624287)
chr2 (204-232)||(1886957-1886985)
[»] scaffold0171 (2 HSPs)
scaffold0171 (202-266)||(23369-23433)
scaffold0171 (226-274)||(23483-23531)
[»] chr7 (6 HSPs)
chr7 (203-274)||(24105628-24105699)
chr7 (205-269)||(49107773-49107837)
chr7 (204-274)||(21864756-21864827)
chr7 (200-231)||(25481842-25481873)
chr7 (205-233)||(2334205-2334233)
chr7 (204-232)||(17851375-17851403)
[»] chr8 (3 HSPs)
chr8 (204-274)||(4298924-4298994)
chr8 (203-232)||(43737900-43737929)
chr8 (226-274)||(22197780-22197828)
[»] chr5 (9 HSPs)
chr5 (203-269)||(22013363-22013430)
chr5 (204-269)||(19820437-19820503)
chr5 (203-233)||(39205847-39205877)
chr5 (204-237)||(17593789-17593822)
chr5 (200-237)||(43554488-43554525)
chr5 (204-232)||(6401442-6401470)
chr5 (219-275)||(14422870-14422926)
chr5 (204-232)||(14674231-14674259)
chr5 (246-274)||(22299518-22299546)
[»] chr3 (5 HSPs)
chr3 (204-269)||(14223896-14223961)
chr3 (201-232)||(3164112-3164143)
chr3 (215-269)||(11665905-11665960)
chr3 (202-277)||(14216841-14216916)
chr3 (202-277)||(14222970-14223045)
[»] chr1 (5 HSPs)
chr1 (204-271)||(5376541-5376608)
chr1 (205-236)||(23653318-23653349)
chr1 (204-238)||(43112938-43112972)
chr1 (204-237)||(23439945-23439978)
chr1 (204-274)||(38078699-38078771)
[»] scaffold0311 (1 HSPs)
scaffold0311 (230-274)||(10509-10553)


Alignment Details
Target: scaffold0793 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 5176 - 4922
Alignment:
Q  20 cgaatgtaaaatgatttatgtttgaacacatctacctaaagttaacaataaatttcgtgttaacaataaatgtactgtnnnnnnnncaataaattttagg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  5176 cgaatgtaaaatgatttatgtttgaacacatctacctaaagttaacaataaatttcgtgttaacaataaatgtactgtaaaaaaaacaataaattttagg 5077  T
Q  120 gtaaaaatcaagtttagactcaatgattacaaattctatattcaagttaaaatcaactatggaggcaaaattaattattaatatctatgaagcacggata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5076 gtaaaaatcaagtttagactcaatgattacaaattctatattcaagttaaaatcaactatggaggcaaaattaattattaatatctatgaagcacggata 4977  T
Q  220 cagacacggacacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4976 cagacacggacacgacacatactctaacacaccgacacagctaataatttaaaaa 4922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 753227 - 752972
Alignment:
Q  19 ccgaatgtaaaatgatttatgtttgaacacatctacctaaagttaacaataaatttcgtgttaacaataaatgtactgtnnnnnnnncaataaattttag 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  753227 ccgaatgtaaaatgatttatgtttgaacacatttacctaaagttaacaataaatttcgtgttaacaataaatgtactgtaaaaaaaacaataaattttag 753128  T
Q  119 ggtaaaaatcaagtttagactcaatgattacaaattctatattcaagttaaaatcaactatggaggcaaaattaattattaatatctatgaagcacggat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  753127 ggtaaaaatcaagtttagactcaatgattacaaattctatattcaagttaaaatcaactatggaggcaaaattaattattaatatctatgaagcacggat 753028  T
Q  219 acagacacggacacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  753027 acagacacggacacgacacatactctaacacaccgacacagctaataatttaaaaa 752972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 715692 - 715646
Alignment:
Q  228 gacacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  715692 gacacgacacatactctaacacaccgacacagctaataatttaaaaa 715646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 28720827 - 28720897
Alignment:
Q  204 ctatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    |||||||||||| |||||||||||||||||||||  || || |||  ||||||||||||||||||| ||||    
T  28720827 ctatgaagcacgtatacagacacggacacgacacgaacactgacatgccgacacagctaataatttgaaaa 28720897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 12696277 - 12696350
Alignment:
Q  206 atgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataatttaaaaatatta 279  Q
    ||||||||||||||| ||||||||||||||||  || || |||| ||||||||||||||||||| |||| ||||    
T  12696277 atgaagcacggatacggacacggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatta 12696350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 9658832 - 9658897
Alignment:
Q  206 atgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataatttaa 271  Q
    ||||||||||||||||||||| ||||||||||  || || |||| ||||||| |||||||||||||    
T  9658832 atgaagcacggatacagacacagacacgacacggacactgacacgccgacaccgctaataatttaa 9658897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 31959111 - 31959180
Alignment:
Q  205 tatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    |||||||||||||||| |||||||||| |||||  || || |||| ||| ||||||||||||||| ||||    
T  31959111 tatgaagcacggatacggacacggacatgacacgaacactgacacgccgtcacagctaataatttgaaaa 31959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 1681702 - 1681779
Alignment:
Q  204 ctatgaagcacggatacagacacggacac-------gacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    ||||||||||||||||||||||| |||||       ||||||||| ||||||| |||||||| |||||||||| ||||    
T  1681702 ctatgaagcacggatacagacacagacaccgaacacgacacatacactaacacgccgacacaactaataatttgaaaa 1681779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 8365628 - 8365554
Alignment:
Q  204 ctatgaagcacggatacagaca-cggacacgacacatactctaacacaccgacacagctaataatttaaaaatat 277  Q
    ||||||||||||||||| |||| | ||||||||||  || || |||| |||||||| |||||||||| |||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttgaaaatat 8365554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 9107456 - 9107408
Alignment:
Q  226 cggacacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    ||||||||||||  || ||||||| ||||||||||||||||||| ||||    
T  9107456 cggacacgacacggacactaacacgccgacacagctaataatttgaaaa 9107408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 34225920 - 34225888
Alignment:
Q  200 atatctatgaagcacggatacagacacggacac 232  Q
    ||||||||||||||||||||| |||||||||||    
T  34225920 atatctatgaagcacggatacggacacggacac 34225888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 23717977 - 23718042
Alignment:
Q  204 ctatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataattt 269  Q
    |||||||||||||||||||||||||||| |||||  || || |||||||||||| |||||||||||    
T  23717977 ctatgaagcacggatacagacacggacatgacacggacactgacacaccgacaccgctaataattt 23718042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 24105649 - 24105714
Alignment:
Q  204 ctatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataattt 269  Q
    |||||||||||||||||||||||||||| |||||  || || |||||||||||| |||||||||||    
T  24105649 ctatgaagcacggatacagacacggacatgacacggacactgacacaccgacaccgctaataattt 24105714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 21374809 - 21374732
Alignment:
Q  204 ctatgaagcacggatacagacacggacac--gacacatactctaacacaccgacacagctaataatttaaaaatatta 279  Q
    ||||||||||||||||| |||||||||||  |||||  || ||||||| ||||||||||||||||||| |||| ||||    
T  21374809 ctatgaagcacggatacggacacggacaccggacacggacactaacacgccgacacagctaataatttgaaaaaatta 21374732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 21091674 - 21091741
Alignment:
Q  204 ctatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataatttaa 271  Q
    |||||||||||||||||| |||||||||| | ||  || || |||||||||||| |||||||||||||    
T  21091674 ctatgaagcacggatacaaacacggacacaagacggacactgacacaccgacaccgctaataatttaa 21091741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 21782927 - 21782861
Alignment:
Q  204 ctatgaagcacggatacagacac-ggacacgacacatactctaacacaccgacacagctaataattt 269  Q
    |||||||||||| |||||||||| |||||||||||| || || |||| ||||||| |||||||||||    
T  21782927 ctatgaagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaataattt 21782861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 20539783 - 20539712
Alignment:
Q  204 ctatgaagcacggatacagacac-ggacacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    ||||||||||||||||| ||||| |||||||||||  || || ||||  |||||||||||||||||| ||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaa 20539712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 21624217 - 21624287
Alignment:
Q  205 tatgaagcacggatacagacacgga-cacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    |||||||| ||||||| ||||| || ||||||||| || || |||| ||||||||||||||||||| ||||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattttaaaa 21624287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 232
Target Start/End: Complemental strand, 1886985 - 1886957
Alignment:
Q  204 ctatgaagcacggatacagacacggacac 232  Q
    |||||||||||||||||||||||||||||    
T  1886985 ctatgaagcacggatacagacacggacac 1886957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 23369 - 23433
Alignment:
Q  202 atctatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataa 266  Q
    ||||||||||||||||||| ||||||||||||||||| || || |||| ||||||||| ||||||    
T  23369 atctatgaagcacggatacggacacggacacgacacagacactgacacgccgacacagataataa 23433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 23483 - 23531
Alignment:
Q  226 cggacacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    |||||||||||||||| || |||||||||||||| |||||| |||||||    
T  23483 cggacacgacacatacactgacacaccgacacagttaataacttaaaaa 23531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 24105628 - 24105699
Alignment:
Q  203 tctatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    |||||||||||||||||| || |||||||||||||  || || |||| ||||||||||||||||||| ||||    
T  24105628 tctatgaagcacggatacggatacggacacgacacggacactgacacgccgacacagctaataatttgaaaa 24105699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 49107773 - 49107837
Alignment:
Q  205 tatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataattt 269  Q
    |||||| ||||||||| |||| |||||||||||  ||||| |||||||||||| |||||||||||    
T  49107773 tatgaaacacggatacggacaaggacacgacacggactctgacacaccgacaccgctaataattt 49107837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 21864756 - 21864827
Alignment:
Q  204 ctatgaagcacggatacagaca-cggacacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    |||||||||||||||||| ||| ||||||||||||  || |  |||||| ||||||||||||||||| ||||    
T  21864756 ctatgaagcacggatacacacatcggacacgacacggacacggacacacggacacagctaataatttgaaaa 21864827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 25481842 - 25481873
Alignment:
Q  200 atatctatgaagcacggatacagacacggaca 231  Q
    ||||||||||||||||||||||||||||||||    
T  25481842 atatctatgaagcacggatacagacacggaca 25481873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 2334205 - 2334233
Alignment:
Q  205 tatgaagcacggatacagacacggacacg 233  Q
    |||||||||||||||||||||||||||||    
T  2334205 tatgaagcacggatacagacacggacacg 2334233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 17851375 - 17851403
Alignment:
Q  204 ctatgaagcacggatacagacacggacac 232  Q
    |||||||||||||||||||||||||||||    
T  17851375 ctatgaagcacggatacagacacggacac 17851403  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 4298994 - 4298924
Alignment:
Q  204 ctatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    ||||||||||||||||  ||||||||||||||||| |  ||||||| ||||||||| ||||||||| ||||    
T  4298994 ctatgaagcacggatatggacacggacacgacacagatactaacacgccgacacagttaataatttgaaaa 4298924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 232
Target Start/End: Complemental strand, 43737929 - 43737900
Alignment:
Q  203 tctatgaagcacggatacagacacggacac 232  Q
    ||||||||||||||||||||||||||||||    
T  43737929 tctatgaagcacggatacagacacggacac 43737900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 22197828 - 22197780
Alignment:
Q  226 cggacacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    ||||||||||||| || ||||||| || |||||||||||||||| ||||    
T  22197828 cggacacgacacagacactaacacgccaacacagctaataatttgaaaa 22197780  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 22013363 - 22013430
Alignment:
Q  203 tctatgaagcacggatacagacac-ggacacgacacatactctaacacaccgacacagctaataattt 269  Q
    |||||||||||||||||| ||||| |||||||||||  || || |||| |||||||||||||||||||    
T  22013363 tctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataattt 22013430  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 19820503 - 19820437
Alignment:
Q  204 ctatgaagcacggatacagacac-ggacacgacacatactctaacacaccgacacagctaataattt 269  Q
    ||||||||||||||||| ||||| |||||||||||  || || |||| ||||||| |||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataattt 19820437  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 233
Target Start/End: Original strand, 39205847 - 39205877
Alignment:
Q  203 tctatgaagcacggatacagacacggacacg 233  Q
    |||||||||||||||||||||||||||||||    
T  39205847 tctatgaagcacggatacagacacggacacg 39205877  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 17593822 - 17593789
Alignment:
Q  204 ctatgaagcacggatacagacacggacacgacac 237  Q
    |||||||||||||||||| |||||||||||||||    
T  17593822 ctatgaagcacggatacaaacacggacacgacac 17593789  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 43554488 - 43554525
Alignment:
Q  200 atatctatgaagcacggatacagacacggacacgacac 237  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  43554488 atatatatgaagcacggacacagacacggacacgacac 43554525  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 6401442 - 6401470
Alignment:
Q  204 ctatgaagcacggatacagacacggacac 232  Q
    |||||||||||||||||||||||||||||    
T  6401442 ctatgaagcacggatacagacacggacac 6401470  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 14422870 - 14422926
Alignment:
Q  219 acagacacggacacgacacatactctaacacaccgacacagctaataatttaaaaat 275  Q
    ||||| ||||||||||||   || || ||||||||| ||||||||||||||||||||    
T  14422870 acagatacggacacgacaaggacactgacacaccgatacagctaataatttaaaaat 14422926  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 14674231 - 14674259
Alignment:
Q  204 ctatgaagcacggatacagacacggacac 232  Q
    |||||||||||||||||||||||||||||    
T  14674231 ctatgaagcacggatacagacacggacac 14674259  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 22299546 - 22299518
Alignment:
Q  246 acacaccgacacagctaataatttaaaaa 274  Q
    |||||||||||||||||||||||||||||    
T  22299546 acacaccgacacagctaataatttaaaaa 22299518  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 14223961 - 14223896
Alignment:
Q  204 ctatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataattt 269  Q
    |||||||||||| | |||||||||||||||||||| || |  |||| ||||||||| |||||||||    
T  14223961 ctatgaagcacgaacacagacacggacacgacacagacaccgacacgccgacacagataataattt 14223896  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 232
Target Start/End: Complemental strand, 3164143 - 3164112
Alignment:
Q  201 tatctatgaagcacggatacagacacggacac 232  Q
    ||||||||||||||||||||||||||||||||    
T  3164143 tatctatgaagcacggatacagacacggacac 3164112  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 11665905 - 11665960
Alignment:
Q  215 ggatacagacac-ggacacgacacatactctaacacaccgacacagctaataattt 269  Q
    |||||||||||| |||||||||||| || ||||||||||||||  |||||||||||    
T  11665905 ggatacagacaccggacacgacacacacactaacacaccgacaacgctaataattt 11665960  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 277
Target Start/End: Original strand, 14216841 - 14216916
Alignment:
Q  202 atctatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataatttaaaaatat 277  Q
    ||||||||||||||||| | ||||| ||||||||||  || || ||||  ||||||| |||||||||| |||||||    
T  14216841 atctatgaagcacggatgcggacacagacacgacacggacactgacacgtcgacacaactaataattttaaaatat 14216916  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 277
Target Start/End: Original strand, 14222970 - 14223045
Alignment:
Q  202 atctatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataatttaaaaatat 277  Q
    ||||||||||||||||| | ||||| ||||||||||  || || ||||  ||||||| |||||||||| |||||||    
T  14222970 atctatgaagcacggatgcggacacagacacgacacggacactgacacgtcgacacaactaataattttaaaatat 14223045  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 5376608 - 5376541
Alignment:
Q  204 ctatgaagcacggatacagacacggacacgacacatactctaacacaccgacacagctaataatttaa 271  Q
    |||||| ||||| |||||||  ||||||||||||  || ||||||| ||||||| |||||||||||||    
T  5376608 ctatgaggcacgtatacagatccggacacgacacggacactaacacgccgacaccgctaataatttaa 5376541  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 236
Target Start/End: Original strand, 23653318 - 23653349
Alignment:
Q  205 tatgaagcacggatacagacacggacacgaca 236  Q
    ||||||||||||||||||||||||||||||||    
T  23653318 tatgaagcacggatacagacacggacacgaca 23653349  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 43112938 - 43112972
Alignment:
Q  204 ctatgaagcacggatacagacacggacacgacaca 238  Q
    ||||||||||||| |||||||||||||||||||||    
T  43112938 ctatgaagcacgggtacagacacggacacgacaca 43112972  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 23439945 - 23439978
Alignment:
Q  204 ctatgaagcacggatacagacacggacacgacac 237  Q
    |||||||||||||| |||||||||||||||||||    
T  23439945 ctatgaagcacggacacagacacggacacgacac 23439978  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 38078771 - 38078699
Alignment:
Q  204 ctatgaagcacggatacagacacggacac--gacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    ||||||||||||||||| |||||||||||  |||||  || || ||||  |||||||||||||||||| ||||    
T  38078771 ctatgaagcacggatacggacacggacaccggacacgaacactgacacgtcgacacagctaataatttgaaaa 38078699  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 10553 - 10509
Alignment:
Q  230 cacgacacatactctaacacaccgacacagctaataatttaaaaa 274  Q
    ||||||||  || ||||||||||||||||||||||||||| ||||    
T  10553 cacgacacggacactaacacaccgacacagctaataatttgaaaa 10509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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