View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_low_27 (Length: 282)
Name: NF14132_low_27
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 34765500 - 34765234
Alignment:
| Q |
1 |
taatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatccagttgcatgcctca |
100 |
Q |
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| T |
34765500 |
taatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatccagttgcatgcctca |
34765401 |
T |
|
| Q |
101 |
agagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccacaatgagttcattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34765400 |
agagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccacaatgagttcattgt |
34765301 |
T |
|
| Q |
201 |
cacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaacattgttgtt |
267 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34765300 |
cacattcctcgttccaacacttgatcctctcactctttcaatgcatcaaaccttgaacattgttgtt |
34765234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 44015408 - 44015301
Alignment:
| Q |
45 |
cagaagctaacttttttggatttgagctataacagcttatccagttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttga |
144 |
Q |
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|||||||||||| ||||||||||||| ||||| |||||||| || |||| |||| |||| ||||||||| |||||| | ||||| |||||| |||||| |
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| T |
44015408 |
cagaagctaactcttttggatttgagttataatagcttatctggtagcatacctccagagattggtcatgttacaagcctaacaatcagtttggatttga |
44015309 |
T |
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| Q |
145 |
gctcaaat |
152 |
Q |
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|||||||| |
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| T |
44015308 |
gctcaaat |
44015301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 6440469 - 6440551
Alignment:
| Q |
161 |
atgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatg |
243 |
Q |
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|||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||| |
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| T |
6440469 |
atgtgaaattcattatcgttaaccacaatgagttcattgtcacattcctcgttccaacatttggtcgtctcactccttcaatg |
6440551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 895501 - 895426
Alignment:
| Q |
184 |
cacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaaca |
259 |
Q |
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| T |
895501 |
cacaatgaattcattgtcacattcatcattccaacactttctcctcttactccttcaatgcaacaagtcttgaaca |
895426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 905139 - 905214
Alignment:
| Q |
184 |
cacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaaca |
259 |
Q |
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|||||||| ||||||||||||||| || ||||||| ||| |||||| |||| ||||||||| ||| |||||||| |
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| T |
905139 |
cacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
905214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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