View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_low_29 (Length: 268)
Name: NF14132_low_29
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_low_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 12493237 - 12492982
Alignment:
| Q |
18 |
atgccaacaaatattaatttatgaataataatacttgttttagaaatgatgta-----taatgataatgctaggaagccattgttcccagaagcaaatta |
112 |
Q |
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| T |
12493237 |
atgccaacaaatattaatttatgaatagtaatacttgttttagaaatgatgtaatgtataatgataatgctagcaagccattgttcccataagcaaatta |
12493138 |
T |
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| Q |
113 |
catagttgtttatgttgaatacatactctctctagaacaccctcttcttactatggttaatcaacagtggaaggtgtgaaactaagttgaattttcagga |
212 |
Q |
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| T |
12493137 |
catagttgtttatgttgaatacatactctctctagaacaccctcttcttactatggttaatcaacagtggagggtgtgaaactaagttgaattttcagga |
12493038 |
T |
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| Q |
213 |
tgtaatcaattccatggagaaagagggagagaaaggtgagtttgcgtttggtgctt |
268 |
Q |
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| T |
12493037 |
tgtaatcaattccatggagaaagagggagagaaaggtgagtttgagtttggtgctt |
12492982 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 36956679 - 36956717
Alignment:
| Q |
18 |
atgccaacaaatattaatttatgaataataatacttgtt |
56 |
Q |
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| T |
36956679 |
atgccaacaaatattaatttatgaataataatacttgtt |
36956717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 47304244 - 47304297
Alignment:
| Q |
104 |
agcaaattacatagttgtttatgttgaatacatactctctctagaacaccctct |
157 |
Q |
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| T |
47304244 |
agcaaattcaatagttgtttctgttgaatacagactcgctccagaacaccctct |
47304297 |
T |
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