View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_low_3 (Length: 667)
Name: NF14132_low_3
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 650
Target Start/End: Original strand, 10332970 - 10333575
Alignment:
| Q |
14 |
caaagggaaagaagatagagtgttcaaactaaacaaggctctatatagcttgaaatgagaacctagggcctagaatnnnnnnnttgacaaatgctttaag |
113 |
Q |
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| T |
10332970 |
caaagggaaagaagatagagtgttcaaactaaacaaggctctatatagcttgaaatgagaacctagggcctagaataaaaaaattgacaaatgctttaag |
10333069 |
T |
|
| Q |
114 |
aaagaaggatttaagaaatgcattgttgagcatggagtgtatgtaaaaggaagagaagagactagtttacttatcgtatgcttgtatgtggatgatttta |
213 |
Q |
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| T |
10333070 |
aaagaaggatttaagaaatgcattgttgagcatggagtgtatgtaaaaggaagagaagagactagtttacttatcgtatgcttgtatgtggatgatttta |
10333169 |
T |
|
| Q |
214 |
tgttgactggaagcaaagttcaagatattgaagagtttaaatcagtcatgaagtcagaatttgaaatggctggtctagg-aatcttgcatatttcttacg |
312 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| | |
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| T |
10333170 |
tgttgactggaagataaattcaagatattgaagagtttaaatcagtcatgaagtcagaatttgaaatgattggtctaggaaagcttgcatatttcttagg |
10333269 |
T |
|
| Q |
313 |
aatggagattctcaaaacctcaaaaggcttgatacttcatcagaccaagtatgctactgagattctgaa-aggttcaatatctggatcaatatgttggat |
411 |
Q |
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||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |
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| T |
10333270 |
aatagagattctcagaacctcaaaaggcttgatacttcatcagaccaagtatgctactgagatcctgaagaggt------------tcaatatgttggat |
10333357 |
T |
|
| Q |
412 |
tgcaattcagctaccactccaacatatattaatatcagaaatgaagtaaacgaaaaataagaaagtgttgatccaaaactattcaggaagcttattggat |
511 |
Q |
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| T |
10333358 |
tgcaattcagctaccact--aac--atattaatatcataaatgaagtgaaagaaaaagaagaaagtgttgatccaacactattcatgaagcttattgaat |
10333453 |
T |
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| Q |
512 |
cactaaggtacgtatctatgtcaaagcaaaccgaatattcgctattcagttgaaatggtgaccaagttcatgagtaatcatcttaaaactcatttcttag |
611 |
Q |
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| T |
10333454 |
cgctaag----gtatctatgtcaaagcagaccgaatattcgctattcagttgaaatggtgaccaagttcatgagtaatcatctta-------------ag |
10333536 |
T |
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| Q |
612 |
tcgttaaaagaataccgaggtacataaatgggacactac |
650 |
Q |
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| T |
10333537 |
tcgttaaaagaataccgaggtacataaatgggacactac |
10333575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 196 - 375
Target Start/End: Original strand, 33684886 - 33685066
Alignment:
| Q |
196 |
tgtatgtggatgattttatgttgactggaagcaaagttcaagatattgaagagtttaaatcagtcatgaagtcagaatttgaaatggctggtctagg-aa |
294 |
Q |
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||||||| |||||| ||||| | ||||||||||| | |||| ||| |||| || ||||||||||| ||||| || ||||||||| ||| | |||| || |
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| T |
33684886 |
tgtatgtagatgatcttatgctaactggaagcaacatgtaagacattaaagatttcaaatcagtcataaagtctgagtttgaaatgactgatttaggtaa |
33684985 |
T |
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| Q |
295 |
tcttgcatatttcttacgaatggagattctcaaaacctcaaaaggcttgatacttcatcagaccaagtatgctactgagat |
375 |
Q |
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| T |
33684986 |
gcttgcatatttattaggcatggaaattcttagaacctcaaagggattgatactccatcaaaccaaatatgctattgagat |
33685066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 196 - 375
Target Start/End: Original strand, 33701940 - 33702120
Alignment:
| Q |
196 |
tgtatgtggatgattttatgttgactggaagcaaagttcaagatattgaagagtttaaatcagtcatgaagtcagaatttgaaatggctggtctagg-aa |
294 |
Q |
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| T |
33701940 |
tgtatgtagatgatcttatgctaactggaagcaacatgtaagacattaaagatttcaaatcagtcataaagtctgagtttgaaatgactgatttaggtaa |
33702039 |
T |
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| Q |
295 |
tcttgcatatttcttacgaatggagattctcaaaacctcaaaaggcttgatacttcatcagaccaagtatgctactgagat |
375 |
Q |
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| T |
33702040 |
gcttgcatatttattaggcatggaaattcttagaacctcaaagggattgatactccatcaaaccaaatatgctattgagat |
33702120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 611
Target Start/End: Original strand, 14640496 - 14640553
Alignment:
| Q |
554 |
tattcagttgaaatggtgaccaagttcatgagtaatcatcttaaaactcatttcttag |
611 |
Q |
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| T |
14640496 |
tattcagttggaattgttagcaagttcatgagtaaccctctcaaaactcatttcttag |
14640553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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