View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_low_30 (Length: 261)
Name: NF14132_low_30
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 36320414 - 36320176
Alignment:
| Q |
7 |
ttatcttgaagtaaaattttggattgggatccttgttgaccctcagattttggttgatccattggtagttggcatgctttctttatcatgttagactatc |
106 |
Q |
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| T |
36320414 |
ttatcttgaagtaaaattttggattgggatccttgttgacactcagattttggttgattcatgggtagttggcatgctttctttatcatgttagactatc |
36320315 |
T |
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| Q |
107 |
tatgtttttgttgctgaataatttcctttgtgatttttgtttgagaagtcttattatttactatgattttatttctagtatatgtacgatttccccaaaa |
206 |
Q |
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| T |
36320314 |
tatgtttttgttgctgaataatttccattgtgatttttgtttgagaagtcttattatttactatgattttatttccagtatatgtgcgatttctccaaaa |
36320215 |
T |
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| Q |
207 |
taagtttgcttgctaaaaattggctaagaattatatatt |
245 |
Q |
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| T |
36320214 |
taagtttgcttgctaaaaattggctaagaattatatatt |
36320176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 97 - 245
Target Start/End: Complemental strand, 36325384 - 36325234
Alignment:
| Q |
97 |
ttagactatctatgtttttgttgctgaataatttcctttgtgatttttgtttgagaagtcttattatttactatgattttatttctagtatatgtacgat |
196 |
Q |
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| T |
36325384 |
ttagactatcattgtaattgttgctgaataatttcaattgtgatttttgtttgagaagtcttattatttactatgattttatttctagtatatgtgtgat |
36325285 |
T |
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| Q |
197 |
ttccccaaa--ataagtttgcttgctaaaaattggctaagaattatatatt |
245 |
Q |
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| T |
36325284 |
ttctccaaaatataagtttgcttgctaaaaattggctaagaattatatatt |
36325234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 36335779 - 36335627
Alignment:
| Q |
71 |
gtagttggcatgctttctttatcatgttagactatctatgtttttgttgctgaataatttcctttgtgatttttgtttgagaagtcttattatttactat |
170 |
Q |
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| T |
36335779 |
gtagttggcatgctttcttgatca-gttgtgttatctatgtttttgtttctgaatgattttgattatgatttttgtt---gaagtcttatcatttactat |
36335684 |
T |
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| Q |
171 |
gattttatttctagtatatgtacgatttccccaaaataagtttgcttgctaaaaatt |
227 |
Q |
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| T |
36335683 |
gattttatttccggtatttttgtgatttctccaaaataagtttgcttgctaaaaatt |
36335627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 36312998 - 36312852
Alignment:
| Q |
30 |
ttgggatccttgttgaccctcagattttggttgatccattggtagttggcatgctttctttatcatgttagactatctatgtttttgttgctgaataatt |
129 |
Q |
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| T |
36312998 |
ttgggatccttgttgacacttagatttttgttgagtcatgtgtggttggaatgctttcttaatcagttgggtatatctatgtttttgttgctggatgatt |
36312899 |
T |
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| Q |
130 |
tcctttgtgatttttgtttgagaagtcttattatttactatgatttt |
176 |
Q |
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| T |
36312898 |
tcaaatgtgatttttgtttgagaagtcttattatttacaaagatttt |
36312852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 36333039 - 36332969
Alignment:
| Q |
103 |
tatctatgtttttgttgctgaataatttcctttgtgatttttgtttgagaagtcttattatttactatgat |
173 |
Q |
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| T |
36333039 |
tatctatgtttttgttgttgaatgattacaaatgtgatttttatttgagaagtcttattatttaccatgat |
36332969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 17090284 - 17090384
Alignment:
| Q |
74 |
gttggcatgctttctttatcatgttagactatctatgtttttgttgctgaataatttcctttgtgatttttgtttgagaagtcttattatttactatgat |
173 |
Q |
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|||||||||||||||| |||| ||| | |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| | ||||||| |||| |
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| T |
17090284 |
gttggcatgctttcttaatca-gttgggttatctatgtttttgttt-tgaatgatttcaattgtgatttttgtttgagaagtcttttcatttactctgat |
17090381 |
T |
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| Q |
174 |
ttt |
176 |
Q |
| |
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||| |
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| T |
17090382 |
ttt |
17090384 |
T |
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