View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_low_34 (Length: 224)
Name: NF14132_low_34
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_low_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44629424 - 44629647
Alignment:
| Q |
1 |
tgatggaatagtttctctaacatcatggattaagtttgaaaacaacaacacaaatttctttcatcaaaggacttcccaacagaagaagagaaaataggtg |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44629424 |
tgatggaatagtttctctaacatcatggcttaagtttgaaaacaagaacacaaatttctttcatcaaaggacttcccaacagaagaagagaaaataggtg |
44629523 |
T |
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| Q |
101 |
gactctttcatgatttaatggcaatggtttagtaatacagtgctccaatcagcttggtatttgtcattttacatggcattcaagcttattgcttccacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44629524 |
gactctttcatgatttaatggcaatggtttagtaatacagtgctccaattagcttggtatttgtcattttacatggcattcaagcttattgcttccacaa |
44629623 |
T |
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| Q |
201 |
aaacaaaggacggtggcttggctt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
44629624 |
aaacaaaggacggtggcttggctt |
44629647 |
T |
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