View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14132_low_4 (Length: 624)

Name: NF14132_low_4
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14132_low_4
NF14132_low_4
[»] chr4 (38 HSPs)
chr4 (68-614)||(1600439-1600987)
chr4 (101-297)||(55908576-55908772)
chr4 (22-274)||(8183901-8184155)
chr4 (97-288)||(12121314-12121505)
chr4 (97-222)||(570402-570524)
chr4 (100-225)||(53761692-53761817)
chr4 (101-293)||(546968-547160)
chr4 (36-274)||(1548297-1548535)
chr4 (40-234)||(553471-553667)
chr4 (101-262)||(7225766-7225927)
chr4 (437-518)||(55908337-55908418)
chr4 (17-274)||(8186962-8187221)
chr4 (40-234)||(1524397-1524593)
chr4 (101-232)||(659764-659895)
chr4 (170-237)||(3438474-3438541)
chr4 (172-237)||(1533898-1533963)
chr4 (97-239)||(1489267-1489409)
chr4 (172-237)||(1495830-1495895)
chr4 (100-259)||(644884-645043)
chr4 (62-226)||(1519062-1519227)
chr4 (97-295)||(532240-532432)
chr4 (173-235)||(1537677-1537739)
chr4 (436-594)||(3438186-3438343)
chr4 (178-235)||(558630-558687)
chr4 (40-145)||(1513407-1513514)
chr4 (173-237)||(6006455-6006519)
chr4 (171-236)||(1552676-1552738)
chr4 (97-155)||(1537757-1537815)
chr4 (173-237)||(1517407-1517471)
chr4 (103-143)||(1545830-1545870)
chr4 (151-235)||(12120052-12120136)
chr4 (171-226)||(641040-641095)
chr4 (109-239)||(370983-371113)
chr4 (173-227)||(21834296-21834350)
chr4 (194-239)||(1505017-1505062)
chr4 (437-518)||(1527812-1527893)
chr4 (36-93)||(12123424-12123481)
chr4 (438-490)||(641321-641373)
[»] chr8 (10 HSPs)
chr8 (40-285)||(18315133-18315380)
chr8 (40-293)||(32151293-32151545)
chr8 (32-274)||(17636268-17636516)
chr8 (22-277)||(34936031-34936288)
chr8 (21-215)||(27922481-27922674)
chr8 (97-189)||(21235609-21235701)
chr8 (100-234)||(28246206-28246340)
chr8 (147-237)||(44736578-44736668)
chr8 (408-518)||(17627668-17627778)
chr8 (252-293)||(17627911-17627952)
[»] chr6 (26 HSPs)
chr6 (101-274)||(7119212-7119382)
chr6 (101-274)||(7131690-7131860)
chr6 (60-226)||(6402872-6403040)
chr6 (32-234)||(11936186-11936390)
chr6 (32-234)||(11948166-11948370)
chr6 (437-507)||(7993805-7993875)
chr6 (101-226)||(6432216-6432341)
chr6 (101-226)||(6594525-6594650)
chr6 (101-297)||(6394919-6395112)
chr6 (170-290)||(9411476-9411596)
chr6 (101-297)||(6416021-6416214)
chr6 (43-226)||(6585156-6585341)
chr6 (101-297)||(6426566-6426759)
chr6 (101-226)||(7994101-7994226)
chr6 (174-225)||(8913904-8913955)
chr6 (407-513)||(6588949-6589055)
chr6 (101-297)||(6589174-6589367)
chr6 (101-291)||(6410061-6410248)
chr6 (443-509)||(6596567-6596633)
chr6 (172-226)||(14820819-14820873)
chr6 (101-226)||(6596847-6596972)
chr6 (101-141)||(12102321-12102361)
chr6 (59-223)||(6423228-6423394)
chr6 (476-596)||(8913599-8913723)
chr6 (60-141)||(9411367-9411450)
chr6 (437-509)||(6432557-6432629)
[»] chr5 (5 HSPs)
chr5 (21-293)||(41901390-41901661)
chr5 (21-273)||(32267448-32267699)
chr5 (59-297)||(41889402-41889642)
chr5 (151-222)||(28525116-28525187)
chr5 (407-518)||(28532084-28532195)
[»] chr3 (6 HSPs)
chr3 (22-226)||(51113700-51113906)
chr3 (101-297)||(13470583-13470776)
chr3 (35-211)||(51120827-51121005)
chr3 (100-297)||(51764291-51764485)
chr3 (109-295)||(514578-514764)
chr3 (100-259)||(1657305-1657460)
[»] chr2 (4 HSPs)
chr2 (171-297)||(1037512-1037638)
chr2 (63-292)||(32785628-32785856)
chr2 (437-518)||(1037273-1037354)
chr2 (40-236)||(45244994-45245192)
[»] chr1 (6 HSPs)
chr1 (60-297)||(19468350-19468586)
chr1 (176-297)||(9581198-9581319)
chr1 (176-297)||(9586766-9586887)
chr1 (173-286)||(7554546-7554659)
chr1 (469-597)||(19468038-19468166)
chr1 (438-546)||(33160914-33161022)
[»] chr7 (5 HSPs)
chr7 (101-295)||(10614648-10614839)
chr7 (171-232)||(7977703-7977764)
chr7 (160-297)||(10169981-10170115)
chr7 (160-297)||(10177506-10177640)
chr7 (173-225)||(15092071-15092123)
[»] scaffold0295 (1 HSPs)
scaffold0295 (101-275)||(494-668)
[»] scaffold0807 (1 HSPs)
scaffold0807 (171-221)||(1388-1438)
[»] scaffold0014 (3 HSPs)
scaffold0014 (22-90)||(88813-88881)
scaffold0014 (163-228)||(88933-88998)
scaffold0014 (407-466)||(89137-89196)
[»] scaffold0262 (1 HSPs)
scaffold0262 (437-518)||(326-407)
[»] scaffold0105 (1 HSPs)
scaffold0105 (101-232)||(496-627)


Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 68 - 614
Target Start/End: Original strand, 1600439 - 1600987
Alignment:
Q  68 atttcatagagtgcttcatcgtcaaccctt--atatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaac 165  Q
    |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600439 attttatagagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaac 1600538  T
Q  166 actgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttg 265  Q
    |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600539 actgggctaagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttg 1600638  T
Q  266 aaaattgggaaaattggaagcaaacattatgacctttgtatcttgtaacacataattgttagccaaacgtagacacttgatttgagggtttacaacacaa 365  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600639 caaattgggaaaattggaagcaaacattatgatctttgtatcttgtaacacataattgttagccaaacgtagacacttgatttgagggtttacaacacaa 1600738  T
Q  366 ttccctactctttcatatgcaatatttgcgcatgccattacgatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagca 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600739 ttccctactctttcatatgcaatatttgcgcatgccattacgatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagca 1600838  T
Q  466 tactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaaaaatcggctcttttaagaaccaa 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1600839 tactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacaaggcaacatggcgatctttcaaaaaatcggctcttttaagaaccaa 1600938  T
Q  566 atgttggatacgttgacacttggataacaaactaactactccagtataa 614  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1600939 atgttggatacgttgacacttggataacaaactaactactccaatataa 1600987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 101 - 297
Target Start/End: Complemental strand, 55908772 - 55908576
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    ||||||||| |||||||| | || | |||||| |||||| ||||   | || |||| | ||||||| |  ||||| ||||||||||||| |||| |||||    
T  55908772 tgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacat 55908673  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 297  Q
    ||||||| ||||| |||||||||||||||||||||||||  |||   |||||||||||| | ||| |||||||| ||| |||||||||||| |||||    
T  55908672 ctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaagcaaacaatatga 55908576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 274
Target Start/End: Complemental strand, 8184155 - 8183901
Alignment:
Q  22 acaattttgtagtgacaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctcc 119  Q
    ||||||||  ||| ||| || ||||||| ||  ||| |||||||||||| |||||||||||  ||| ||||| ||| ||||  ||||||||||||||||     
T  8184155 acaattttccagtaacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctct 8184056  T
Q  120 agtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaa 219  Q
    |||||  ||||||||||||||||||  | |||| ||||| ||| |   | |||||||||||||| |||||||| | |||| |||||||||| ||||  ||    
T  8184055 agtttcggaacttcaaagttcattctgctcagcctcatttttggaatgtaagctaagttcaaatctctaatctcacaacaactccttaaaatttgagtaa 8183956  T
Q  220 taccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggg 274  Q
    |||||| |||||| |||| || ||||   |||||||||||| | || ||||||||    
T  8183955 tacctttttcagaaatgtcaaagcaatgactcaaatcaagccgctgcaaattggg 8183901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 97 - 288
Target Start/End: Complemental strand, 12121505 - 12121314
Alignment:
Q  97 tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaaca-ctgagctaagttcaaatgtctaatcttag 195  Q
    ||||||||||||||||||| || |||||  ||||||||||||||||||  ||||||||| ||  | |||| ||| | ||||||||||||  ||||||  |    
T  12121505 tatatgacaagttcaacacttctagtttgggaacttcaaagttcattcggcgcagcttccttcctaaacaactg-gttaagttcaaatgcgtaatctcgg 12121407  T
Q  196 aacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaa 288  Q
    ||||| ||||||| |||||  |||||||||||||||||||||||  ||||   ||||||||||||| ||| |||||||| |||  ||||||||    
T  12121406 aacatgtccttaagacttggaaaataccttcttcagatatgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaacggaagcaa 12121314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 570402 - 570524
Alignment:
Q  97 tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttaga 196  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||| |||| | |||| || ||||||||||||||||| ||||  ||| |    
T  570402 tatatgacaagttcaacacctcgagtttgagaacttcaaagttcaatccacgcagtttcacttttgagcagtgagctaagttcaaatgcctaagtttaca 570501  T
Q  197 acatctccttaaaacttgacaaatac 222  Q
    ||||   |||||||||||||||||||    
T  570502 acat---cttaaaacttgacaaatac 570524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 53761817 - 53761692
Alignment:
Q  100 atgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaaca 199  Q
    |||||||||||||| |||| || ||  ||||| |||||||||||||    ||||||| | |||||||||  |||||||||||||| ||||| ||| ||||    
T  53761817 atgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaaca 53761718  T
Q  200 tctccttaaaacttgacaaatacctt 225  Q
    ||||||||||||||||||||||||||    
T  53761717 tctccttaaaacttgacaaatacctt 53761692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 101 - 293
Target Start/End: Original strand, 546968 - 547160
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||    || |||| || | |||| |  | |||||||||||| || |||||| |||||    
T  546968 tgacaagttcaccacctccaatttaggaacttcaaagttcattccaaataggttcactactaaacaattggataagttcaaatgccttatcttacaacat 547067  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacatt 293  Q
    ||||||||||| | ||||||||  |||||||||||||||   |||   || |||||||||||||| |||||||| ||  |||||| |||||||    
T  547068 ctccttaaaacatcacaaatactgtcttcagatatgttacgacaataacttaaatcaagcagttgcaaattggggaacatggaaggaaacatt 547160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 36 - 274
Target Start/End: Complemental strand, 1548535 - 1548297
Alignment:
Q  36 acaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctccagtttaagaacttc 133  Q
    |||| ||||||||| ||  ||| |||||||||||  ||| ||||| |||||| ||||  ||| ||||  ||||||||||||||||||||||  ||| |||    
T  1548535 acaagtgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttc 1548436  T
Q  134 aaagttcattcctc-gcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcaga 232  Q
    |||||||| |||   | ||||||| | || |||   ||||||||||||| |||||||||||| |||||||   |||||||| |||||||||||| || ||    
T  1548435 aaagttcagtccaaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctga 1548339  T
Q  233 tatgttaatgcaactgctcaaatcaagcagttgaaaattggg 274  Q
    ||||  | ||||| |  |||||||||||||||| ||||||||    
T  1548338 tatgccactgcaattaatcaaatcaagcagttgcaaattggg 1548297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 553471 - 553667
Alignment:
Q  40 ttgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttata--tgacaagttcaacacctccagtttaagaacttcaaag 137  Q
    |||||||||| ||| ||| |||||||| ||  |||  ||||||||||| ||||| ||| ||  |||||||||||||||||||||||| ||||||| ||||    
T  553471 ttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaag 553570  T
Q  138 ttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagata 234  Q
    |||| |   || | ||||| | |||||||  | | |||||||||||||||||| ||| ||||| |||||||||| |||  || | ||||||||||||    
T  553571 ttcaatgtacgtaacttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacatgtccttaaaacatgaacaacagcttcttcagata 553667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 101 - 262
Target Start/End: Complemental strand, 7225927 - 7225766
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    |||||||||||| ||||||| ||  |||||||||||||||||    || ||||||| | ||| ||| |  | |||||||||||||||||||||| |||||    
T  7225927 tgacaagttcaagacctccaattcgagaacttcaaagttcatgttgcgtagcttcactcttggacagtaggataagttcaaatgtctaatcttacaacat 7225828  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcag 262  Q
    |||| ||||||||||||||  ||||||||| | ||||||  | ||  |||||||||||||||    
T  7225827 ctccgtaaaacttgacaaaccccttcttcatacatgttatgggaagagctcaaatcaagcag 7225766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 437 - 518
Target Start/End: Complemental strand, 55908418 - 55908337
Alignment:
Q  437 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 518  Q
    ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  55908418 gagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaac 55908337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 8187221 - 8186962
Alignment:
Q  17 ttactacaattttgtagtgacaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaaca 114  Q
    |||| ||||||||  ||| |||| ||||||||| ||  ||| |||||||| ||| |||| |||| || ||| ||||| ||| ||||  ||||||||||||    
T  8187221 ttacgacaattttccagtaacaactgcaaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaaca 8187122  T
Q  115 cctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttg 214  Q
    ||||||||||   || |||||||||||||||    |||   | | ||| ||| |  |||||||||||||  ||||||| | |||||||| | ||||||||    
T  8187121 cctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctcttcaaaacttg 8187022  T
Q  215 acaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggg 274  Q
    ||||||||||||||||||||||| |  ||||   |||||||||||||  || ||||||||    
T  8187021 acaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaattggg 8186962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 1524593 - 1524397
Alignment:
Q  40 ttgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttata--tgacaagttcaacacctccagtttaagaacttcaaag 137  Q
    |||||||||| || |||| |||| ||||||   |||||||| |||||| ||||| ||| ||  |||||| |||||||||||||  ||  |||||||||||    
T  1524593 ttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaag 1524494  T
Q  138 ttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagata 234  Q
    ||||||||  | || |  ||| | ||||| |  |||||||||||||| ||||  ||| |||||||||||||||| |||  |||||||||||||||||    
T  1524493 ttcattccatgaagttctattttagaacagttggctaagttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttcttcagata 1524397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 101 - 232
Target Start/End: Original strand, 659764 - 659895
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    |||||||||||||||||| |||||  |||||||||| || ||| |||| ||||||  | |||||||    |||||||| |||| |||||| ||| |||||    
T  659764 tgacaagttcaacacctctagtttgggaacttcaaaatttattactcgtagcttccctcttgaacagcaggctaagtttaaatatctaatgttacaacat 659863  T
Q  201 ctccttaaaacttgacaaataccttcttcaga 232  Q
    |||||||||| ||||| |||| ||||||||||    
T  659864 ctccttaaaatttgaccaatatcttcttcaga 659895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 3438541 - 3438474
Alignment:
Q  170 agctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 237  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  || |||||| ||||||||||    
T  3438541 agctaagttcaaatgtctaatcttacaacatctccttaaaacttgaataacaccttcgtcagatatgt 3438474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 1533963 - 1533898
Alignment:
Q  172 ctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 237  Q
    |||||||||||||| | |||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  1533963 ctaagttcaaatgtgtcatcttacaacatctccttaaaacatgactaataccttcttcagatatgt 1533898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 1489409 - 1489267
Alignment:
Q  97 tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttaga 196  Q
    ||||||||||||||||||| || |||||  ||||||||||||||||||| | ||||||| ||  | || |      |||||||||||| ||||| | |||    
T  1489409 tatatgacaagttcaacacttctagtttgggaacttcaaagttcattccgcacagcttctttcctaaagatcttcttaagttcaaatgcctaatatcaga 1489310  T
Q  197 acatctccttaaaacttgacaaataccttcttcagatatgtta 239  Q
    |||| || ||||||| ||  |||||||||||||||||||||||    
T  1489309 acatgtctttaaaacatggaaaataccttcttcagatatgtta 1489267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 1495895 - 1495830
Alignment:
Q  172 ctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 237  Q
    |||||| ||||||| | |||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  1495895 ctaagtccaaatgtgtcatcttacaacatctccttaaaacatgaccaataccttcttcagatatgt 1495830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 644884 - 645043
Alignment:
Q  100 atgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaaca 199  Q
    |||||||||  ||||||||||||||  ||||||||||||||| |    | ||||||| | |||||||  ||| ||| |||||||||||||| ||| ||||    
T  644884 atgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaca 644983  T
Q  200 tctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaag 259  Q
    | || ||||||| |||   |||||||||||||||| ||   |||||  ||||||||||||    
T  644984 tatcattaaaacatgaaccataccttcttcagatacgtctttgcaatggctcaaatcaag 645043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 226
Target Start/End: Complemental strand, 1519227 - 1519062
Alignment:
Q  62 tttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcatta 159  Q
    ||||||||  ||||||||||||  || ||||||||| ||||  |||||||||||||||| |||||  |||||||||||||||||| | |||||| |  |     
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattcat-gcagctcctctc 1519129  T
Q  160 ttgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttc 226  Q
    || |  |    ||| |||||||||| |||||| |  ||||||| |||||||||||||||||||||||    
T  1519128 ttaattaaaatgctcagttcaaatgcctaatccttcaacatcttcttaaaacttgacaaataccttc 1519062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 97 - 295
Target Start/End: Original strand, 532240 - 532432
Alignment:
Q  97 tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttaga 196  Q
    |||||||||||||||||||||| || ||  | |||||||||||||||||  | || |||| | ||||| |    | ||||||||||| ||| ||||||      
T  532240 tatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattcactcttgaagag---gttaagttcaaatctctgatctta-- 532334  T
Q  197 acatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattat 295  Q
     |||||| | ||||||||| |||||||||||| ||||||||||   |||  |||||| || ||||  || |||||||| ||| |||| |||||||||||    
T  532335 -catctcttcaaaacttgataaataccttctttagatatgttataacaatagctcaagtccagcatatgtaaattggggaaaatggatgcaaacattat 532432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 1537739 - 1537677
Alignment:
Q  173 taagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatat 235  Q
    |||||||||||| |||| ||  |||||| |||||||||||||| |||||||||||||||||||    
T  1537739 taagttcaaatgcctaagctcggaacatgtccttaaaacttgaaaaataccttcttcagatat 1537677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 436 - 594
Target Start/End: Complemental strand, 3438343 - 3438186
Alignment:
Q  436 tgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatc 535  Q
    |||||| ||| |||||| ||| |||||||||   ||| ||||||||||||||||| |||||||||||| |||||   | ||||  | |||||||||||||    
T  3438343 tgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtttatagacaccaaatcaccatgaaacatggacaacttgacaacatggcgatc 3438244  T
Q  536 tttcaaaaaatcggctcttttaagaaccaaatgttggatacgttgacacttggataaca 594  Q
     || | ||| |  | | ||| |||| |||||||||| |||| |||||||||||||||||    
T  3438243 atttagaaagtaag-tttttgaagatccaaatgttgtatacattgacacttggataaca 3438186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 558630 - 558687
Alignment:
Q  178 tcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatat 235  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| |||||    
T  558630 tcaaatgtctaatgttagaacatgtccttaaaacatgacaaatacctttttctgatat 558687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 1513514 - 1513407
Alignment:
Q  40 ttgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttata--tgacaagttcaacacctccagtttaagaacttcaaag 137  Q
    |||||||||| || |||| | |||||||||| | ||||||| |||||| |||||  || ||  ||||||||||||||| || |||||  |||||||||||    
T  1513514 ttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaag 1513415  T
Q  138 ttcattcc 145  Q
    ||||||||    
T  1513414 ttcattcc 1513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 6006455 - 6006519
Alignment:
Q  173 taagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 237  Q
    ||||||||||||||||||||||  |||| ||||||||||||||  || |||||| ||||||||||    
T  6006455 taagttcaaatgtctaatcttactacatttccttaaaacttgagcaacaccttcatcagatatgt 6006519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 1552738 - 1552676
Alignment:
Q  171 gctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatg 236  Q
    |||||||||||||||||||||||| |||||   |||||||||| |||||||||||| || ||||||    
T  1552738 gctaagttcaaatgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatg 1552676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 1537815 - 1537757
Alignment:
Q  97 tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttc 155  Q
    ||||||||||||||||||| || |||||  |||||||||||||||||||  ||||||||    
T  1537815 tatatgacaagttcaacacttctagtttgggaacttcaaagttcattccatgcagcttc 1537757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 1517471 - 1517407
Alignment:
Q  173 taagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 237  Q
    ||||| ||||||| | |||||| |||||||||||||||| |||   |||||||||||||||||||    
T  1517471 taagtccaaatgtgtcatcttacaacatctccttaaaacatgatcgataccttcttcagatatgt 1517407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 1545830 - 1545870
Alignment:
Q  103 acaagttcaacacctccagtttaagaacttcaaagttcatt 143  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  1545830 acaagttcaacacctccagtttaggaactttaaagttcatt 1545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 12120136 - 12120052
Alignment:
Q  151 gcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatat 235  Q
    |||||| | ||||||| || || |||||||||||||||||||||  || | || |||||||||||| ||||||||| | ||||||    
T  12120136 gcttcagtcttgaacagtgggcaaagttcaaatgtctaatcttactacttttctttaaaacttgaccaataccttcgttagatat 12120052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 641040 - 641095
Alignment:
Q  171 gctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttc 226  Q
    |||||||||||||||||||  ||| ||||| |||||||||||||| |||| |||||    
T  641040 gctaagttcaaatgtctaacattacaacatatccttaaaacttgaaaaattccttc 641095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 370983 - 371113
Alignment:
Q  109 tcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaa 208  Q
    |||||||||| ||||| ||||||  || |||||| ||   || ||||| | |||| || || |||||||||||||| ||||||||||| |||||  ||||    
T  370983 tcaacacctcaagtttgagaactctaatgttcataccatacaacttcactcttgagcagtgggctaagttcaaatgcctaatcttagaccatctatttaa 371082  T
Q  209 aacttgacaaataccttcttcagatatgtta 239  Q
    |||| |||| ||||  |  ||||||||||||    
T  371083 aactcgacagatactgttgtcagatatgtta 371113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 21834350 - 21834296
Alignment:
Q  173 taagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttct 227  Q
    ||||||||||||  |||||||| ||||| ||||||||||||  ||||||||||||    
T  21834350 taagttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttct 21834296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 1505062 - 1505017
Alignment:
Q  194 agaacatctccttaaaacttgacaaataccttcttcagatatgtta 239  Q
    ||||||| |||||||||| ||  |||||||||||||||||||||||    
T  1505062 agaacatgtccttaaaacatggaaaataccttcttcagatatgtta 1505017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 518
Target Start/End: Complemental strand, 1527893 - 1527812
Alignment:
Q  437 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 518  Q
    |||||||||||||||| | | ||||||  ||  ||||| ||||| ||||||||| | |||||||| ||||||||||| ||||    
T  1527893 gagtgcaaacaaggctaaatgtgtgaggctatcacatttactaatgtttatagacaacaaatcactaagaaacgaagacaac 1527812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 12123481 - 12123424
Alignment:
Q  36 acaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaac 93  Q
    |||||||||||||| || |||| || |||| |||| |||| |||||||||||||||||    
T  12123481 acaattgcaaaagcccacgacaactttttgggattgcataaagtgcttcatcgtcaac 12123424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 490
Target Start/End: Original strand, 641321 - 641373
Alignment:
Q  438 agtgcaaacaaggctgattctgtgagcatactacattcactaaggtttataga 490  Q
    ||||||||||||| ||||| ||||||| ||| ||| | |||||||||||||||    
T  641321 agtgcaaacaaggttgattttgtgagcttaccacaatgactaaggtttataga 641373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 40 - 285
Target Start/End: Complemental strand, 18315380 - 18315133
Alignment:
Q  40 ttgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctccagtttaagaacttcaaag 137  Q
    ||||||||||  | |||| |||||||||||  |||||||||||||||| |||||  || ||||  ||||||||||||||||||||||  |||||| ||||    
T  18315380 ttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaag 18315281  T
Q  138 ttcattcctcgcagcttcattattgaa-cactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatg 236  Q
    |||||||| || ||||||||| ||||| ||| ||||||||||||| |||||||||| |||||| || | |||||||||||||||||||||||||| ||||    
T  18315280 ttcattccacgtagcttcattcttgaatcac-gagctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatg 18315182  T
Q  237 ttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaag 285  Q
    |||  |||   ||||||||||||||  || |||||||| ||| ||||||    
T  18315181 ttatcgcagtagctcaaatcaagcaactgcaaattggggaaaatggaag 18315133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 40 - 293
Target Start/End: Original strand, 32151293 - 32151545
Alignment:
Q  40 ttgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttata--tgacaagttcaacacctccagtttaagaacttcaaag 137  Q
    |||||||||| ||  ||| |||||||||||  ||||||||| |||||| |||| |||| ||  ||||||||| ||||||||||| ||   |||||| |||    
T  32151293 ttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaag 32151392  T
Q  138 ttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 237  Q
    |||||||| ||||||||||    | ||||    |  || |||||||| ||||||| ||| |||||   ||||||||||||||| ||||||||||||||||    
T  32151393 ttcattccacgcagcttcacatgtaaacagccggtgaaattcaaatgcctaatctcagagcatct---taaaacttgacaaattccttcttcagatatgt 32151489  T
Q  238 taatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacatt 293  Q
    ||  |||||  ||||||||||||||||| ||||| || ||| ||||||||||||||    
T  32151490 tatggcaacacctcaaatcaagcagttgcaaattagggaaaatggaagcaaacatt 32151545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 32 - 274
Target Start/End: Complemental strand, 17636516 - 17636268
Alignment:
Q  32 agtgacaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaac-cct-tatatgacaagttcaacacctccagtttaagaa 129  Q
    |||||||||||||||||   | |||| |||||||||||  |||| | ||||||||||||||| ||| | | |||||||||||||||||||| |||  |||    
T  17636516 agtgacaattgcaaaagtctaagacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaa 17636417  T
Q  130 cttcaaagttcattcc-tcgc---agcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaatacctt 225  Q
    |||||||||||||||  |||    || |||| | |||||||  |  ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||    
T  17636416 cttcaaagttcattcgatcgatgtagtttcactcttgaacatcggcctaagttcaaatgcctaatattagaacatccccttaaaacttgacaaatacctt 17636317  T
Q  226 cttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggg 274  Q
      || ||||| ||| |||||   |  ||||||||||| || ||||||||    
T  17636316 tctctgatattttattgcaatctcgtaaatcaagcagctgcaaattggg 17636268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 34936288 - 34936031
Alignment:
Q  22 acaattttgtagtgacaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaaccctt--atatgacaagttcaacacctcc 119  Q
    ||||||||| ||| | | |||||||||| || |||| ||||||| |||  ||||||||| || ||| ||||| |||  ||||||||||| |||||||||     
T  34936288 acaattttgaagtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctct 34936189  T
Q  120 agtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaa 219  Q
    |||||  |||| |||||| ||||||   | || |||| | ||||||| |  || |||| |||||||||||| | | |||||||||||||||| ||| |||    
T  34936188 agttttggaacatcaaagatcattctgtgaaggttcacttttgaacaatcggccaagtacaaatgtctaatgtcacaacatctccttaaaacatgataaa 34936089  T
Q  220 taccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaa 277  Q
    ||||||  | |||||||  | |||||  ||||||||||||||| || |||||||||||    
T  34936088 taccttgattagatatgccactgcaatcgctcaaatcaagcagatgcaaattgggaaa 34936031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 27922481 - 27922674
Alignment:
Q  21 tacaattttgtagtgacaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaaccctt--atatgacaagttcaacacctc 118  Q
    |||||||||  |||||||||| ||||||| ||  ||| |||||||||||   ||| ||||||||||| |||||  ||  |||||||||||||||||||||    
T  27922481 tacaattttcaagtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctc 27922580  T
Q  119 cagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttga 215  Q
    || |||  ||||||||||||||||| ||   || ||||  ||||||||||  | |||||||||||||||||| ||| | ||| ||| ||||||||||    
T  27922581 caatttgggaacttcaaagttcatttct---agtttcaccattgaacacttggataagttcaaatgtctaatgttacagcatatccctaaaacttga 27922674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 21235609 - 21235701
Alignment:
Q  97 tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaa 189  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| ||| | ||| |||| | |||| || ||||||||||||||||| ||||    
T  21235609 tatatgacaagttcaacacctccagtttgggaacttcaaagttcactccacacagtttcacttttgagcagtgagctaagttcaaatgcctaa 21235701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 28246340 - 28246206
Alignment:
Q  100 atgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaaca 199  Q
    ||||||||| |||||||||||||||  ||||||||||||||| |    | ||||||| | |||||||  ||| ||| |||||||||||||| ||| ||||    
T  28246340 atgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaaca 28246241  T
Q  200 tctccttaaaacttgacaaataccttcttcagata 234  Q
    | || ||||||| |||  |||||||||||||||||    
T  28246240 tatcattaaaacatgaacaataccttcttcagata 28246206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 44736578 - 44736668
Alignment:
Q  147 cgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 237  Q
    |||||||||||| ||||||| |    |||||| |||||| | || ||||||||| |||||||||| ||| |||||||||||||| ||||||    
T  44736578 cgcagcttcattcttgaacagttgtttaagttaaaatgtgttatgttagaacatgtccttaaaacatgagaaataccttcttcaaatatgt 44736668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 518
Target Start/End: Complemental strand, 17627778 - 17627668
Alignment:
Q  408 atctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaa 507  Q
    |||||||||||| ||||||| ||   |  ||||| |||||||||||||||   |||||| | ||| | ||||||||||| ||| ||||||| ||||||||    
T  17627778 atctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattcgtcgagcatccgacaataactaaggtttacagacaccaaattaccaagaa 17627679  T
Q  508 acgaagtcaac 518  Q
    | |||| ||||    
T  17627678 atgaagacaac 17627668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 17627952 - 17627911
Alignment:
Q  252 aaatcaagcagttgaaaattgggaaaattggaagcaaacatt 293  Q
    |||||||||||||| |||||||| ||| ||||||||||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacatt 17627911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 101 - 274
Target Start/End: Original strand, 7119212 - 7119382
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    ||||||||||||||||||||| |   ||||  |||||||||||||  | ||||||| | ||||||| || ||||||||||||||| ||||||||||||||    
T  7119212 tgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacat 7119311  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggg 274  Q
    ||||||||||||||||||||||   |||||||||||||| ||||| |  |||||||||| ||||| ||||||||    
T  7119312 ctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggg 7119382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 101 - 274
Target Start/End: Original strand, 7131690 - 7131860
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    ||||||||||||||||||||| |   ||||  |||||||||||||  | ||||||| | ||||||| || ||||||||||||||| ||||||||||||||    
T  7131690 tgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacat 7131789  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggg 274  Q
    ||||||||||||||||||||||   |||||||||||||| ||||| |  |||||||||| ||||| ||||||||    
T  7131790 ctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggg 7131860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 6402872 - 6403040
Alignment:
Q  60 tctttgagatttcatagagtgcttcatcgtcaaccct--tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcat 157  Q
    ||||||||||  ||||||||| |||||| |||||| |  ||| ||||||||||||||| || ||||   ||||| ||||||| |||||  | |||||||     
T  6402872 tctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcac 6402971  T
Q  158 tattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttc 226  Q
    | ||||||||  || |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  6402972 tcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 11936390 - 11936186
Alignment:
Q  32 agtgacaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttata--tgacaagttcaacacctccagtttaagaa 129  Q
    ||||||| |||||||||| ||  ||| |||||||||||   |||||||| || ||||||||| ||| ||  |||||||| |||||||||||||||  |||    
T  11936390 agtgacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaa 11936291  T
Q  130 cttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttc 229  Q
    |||||||||||| |   || ||||||| | |||||||  ||| ||| |||||||||||||| ||| ||||| || ||||||| |||  ||||||||||||    
T  11936290 cttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttc 11936191  T
Q  230 agata 234  Q
    |||||    
T  11936190 agata 11936186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 11948370 - 11948166
Alignment:
Q  32 agtgacaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttata--tgacaagttcaacacctccagtttaagaa 129  Q
    ||||||| |||||||||| ||  ||| |||||||||||   |||||||| || ||||||||| ||| ||  |||||||| |||||||||||||||  |||    
T  11948370 agtgacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaa 11948271  T
Q  130 cttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttc 229  Q
    |||||||||||| |   || ||||||| | |||||||  ||| ||| |||||||||||||| ||| ||||| || ||||||| |||  ||||||||||||    
T  11948270 cttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttc 11948171  T
Q  230 agata 234  Q
    |||||    
T  11948170 agata 11948166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 437 - 507
Target Start/End: Complemental strand, 7993875 - 7993805
Alignment:
Q  437 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaa 507  Q
    ||||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  7993875 gagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaa 7993805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 101 - 226
Target Start/End: Original strand, 6432216 - 6432341
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    ||||||||||||||||| ||| ||  |||||||||||||||||||  | ||||||| | ||  ||| |  ||||||||||||||| |||  ||| |||||    
T  6432216 tgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggctaagttcaaatgtttaagtttacaacat 6432315  T
Q  201 ctccttaaaacttgacaaataccttc 226  Q
    ||||||||||||||||||||||||||    
T  6432316 ctccttaaaacttgacaaataccttc 6432341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 6594650 - 6594525
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    |||||||| |||||||||||||||  |||||  |||||| |||||  | ||||||| | ||||||||   | ||||| ||||||| |||||||| |||||    
T  6594650 tgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatcttataacat 6594551  T
Q  201 ctccttaaaacttgacaaataccttc 226  Q
    ||||||||||||||||||||||||||    
T  6594550 ctccttaaaacttgacaaataccttc 6594525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 101 - 297
Target Start/End: Original strand, 6394919 - 6395112
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    ||||||||||||||||||||| |   ||||| |||||||||||||  | || |||| | |||||||   |||||||||||||||| ||| |||| |||||    
T  6394919 tgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacat 6395018  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 297  Q
     || ||||||||||||||||||   |||||||||| |    |||||   |||||||||| || || |||||||| ||| |||||| |||||||||||    
T  6395019 ttctttaaaacttgacaaatac---cttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaattggggaaaatggaagtaaacattatga 6395112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 9411476 - 9411596
Alignment:
Q  170 agctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaa 269  Q
    ||||| ||||||||||||||| |||  ||||||||||||||| ||  |||||||||| | ||||||||||   || | ||||||||||||||| || |||    
T  9411476 agctaggttcaaatgtctaatgttaccacatctccttaaaacctgcaaaataccttcgttagatatgttacaacatccgctcaaatcaagcagctgcaaa 9411575  T
Q  270 ttgggaaaattggaagcaaac 290  Q
    ||||| ||| |||||||||||    
T  9411576 ttggggaaaatggaagcaaac 9411596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 101 - 297
Target Start/End: Original strand, 6416021 - 6416214
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    ||||||||||||||||||||| ||  ||||| |||||| ||||||  | ||||||| | ||  |||    |||||||||||||| | ||||||| |||||    
T  6416021 tgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatcttacaacat 6416120  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 297  Q
     || ||||||||||||||||||   ||||||||| |  | | ||||   ||||||||||||| || |||||||| || ||||||| |||||||||||    
T  6416121 atctttaaaacttgacaaatac---cttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatga 6416214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 226
Target Start/End: Complemental strand, 6585341 - 6585156
Alignment:
Q  43 caaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttatat--gacaagttcaacacctccagtttaagaacttcaaagttc 140  Q
    ||||||| ||| ||| |||||||||||  ||||||||| |||||| |||||| || |||  ||||||||||| |||||||  |    ||||  ||||||     
T  6585341 caaaagcgcagaacaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagttt 6585242  T
Q  141 attcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttc 226  Q
    |||||  | ||||||| | ||||||||  ||  ||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||    
T  6585241 attccaagtagcttcactcttgaacacccagtaaagttcaaatgcctaatattaaaacatctccttaaaacatgacaaataccttc 6585156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 101 - 297
Target Start/End: Original strand, 6426566 - 6426759
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    |||||| |||||||||||||| |   ||||| |||||||||||||  | || ||||   |||||||   |||||||||||||||| ||| |||| |||||    
T  6426566 tgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagttcaaatgtttaagcttacaacat 6426665  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 297  Q
     |||||||||||| ||||||||   |||||||||| | |  ||||    |||||||||| || || |||||||| ||| |||||||| |||||||||    
T  6426666 ttccttaaaacttcacaaatac---cttcagatatttcacggcaaaccttcaaatcaagtagctgtaaattggggaaaatggaagcatacattatga 6426759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 7994226 - 7994101
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    ||||| |||||||||||| || ||  ||||| |||||||||||||| | ||||||| | ||| ||| |  |||| ||||||||| || |||||| |||||    
T  7994226 tgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacat 7994127  T
Q  201 ctccttaaaacttgacaaataccttc 226  Q
     |||||||||| | ||||||||||||    
T  7994126 ttccttaaaacgtaacaaataccttc 7994101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 8913955 - 8913904
Alignment:
Q  174 aagttcaaatgtctaatcttagaacatctccttaaaacttgacaaatacctt 225  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||||    
T  8913955 aagttcaaatgtttaatcttacaacatcttcttaaaacttgacaaatacctt 8913904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 407 - 513
Target Start/End: Complemental strand, 6589055 - 6588949
Alignment:
Q  407 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaaga 506  Q
    |||||||  ||||||||||||||||  |   ||||||||||| ||||||||||||| | |||| || | |||||||||||  || |||||||||||||||    
T  6589055 gatctcaccaagtaaaggacacttcctagcaagtgcaaacaaagctgattctgtgatcttactgcaattactaaggtttacggacaccaaatcaccaaga 6588956  T
Q  507 aacgaag 513  Q
    || ||||    
T  6588955 aaggaag 6588949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 101 - 297
Target Start/End: Complemental strand, 6589367 - 6589174
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    |||||||||||||||||||||  |  ||||| |||||||||||||  | ||||||| | |   |||    |||||||||||||| ||||||||| |||||    
T  6589367 tgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacat 6589268  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 297  Q
    || || || |||||||||||||   ||| |||||||||| | |||    | ||||||||||  |  |||||||| ||| ||||||||||||||||||    
T  6589267 cttctcaatacttgacaaatac---ctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatga 6589174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 291
Target Start/End: Original strand, 6410061 - 6410248
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    |||| |||||||||||| ||| ||  |||||||||||||||||||  | ||||||| | ||   || |  ||||||| ||||||  ||| |||| |||||    
T  6410061 tgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttttgcaataggctaagtccaaatgcttaagcttacaacat 6410160  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaaca 291  Q
     ||  |||||||||||||||||||||   |||||| |    |||||   |||||||||| ||||| |||||||||||| ||||||||||||    
T  6410161 ttctgtaaaacttgacaaataccttc---agatatttgctggcaacccgtcaaatcaagtagttgtaaattgggaaaaatggaagcaaaca 6410248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 509
Target Start/End: Complemental strand, 6596633 - 6596567
Alignment:
Q  443 aaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaac 509  Q
    ||||| |||||||||||||||| |   ||| | | ||||||||||||||||||||||||||||||||    
T  6596633 aaacacggctgattctgtgagccttgaacaatgattaaggtttatagaaaccaaatcaccaagaaac 6596567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 14820819 - 14820873
Alignment:
Q  172 ctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttc 226  Q
    |||||||||||||| ||| |||| ||||| |||||||| ||||||||||||||||    
T  14820819 ctaagttcaaatgtttaagcttacaacatttccttaaaccttgacaaataccttc 14820873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 6596972 - 6596847
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    ||||||||||||||||||||| |   ||| ||||||||| ||| |  |  ||||||   ||||||| |  ||| ||||||||||  ||||||||  ||||    
T  6596972 tgacaagttcaacacctccagctggggaatttcaaagtttatttcaagtcgcttcacacttgaacattcggctcagttcaaatgcttaatcttatcacat 6596873  T
Q  201 ctccttaaaacttgacaaataccttc 226  Q
    ||||| ||||||||||||||||||||    
T  6596872 ctcctgaaaacttgacaaataccttc 6596847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 12102321 - 12102361
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttca 141  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  12102321 tgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 6423228 - 6423394
Alignment:
Q  59 ctctttgagatttcatagagtgcttcatcgtcaacccttatat--gacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 156  Q
    |||||||||||  ||||||||| || ||||  ||| ||| |||  |||||||||||||||||||| ||  |||||| |||||||||| | || |||||||    
T  6423228 ctctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttca 6423327  T
Q  157 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaatacc 223  Q
     |  |  ||| |  ||||||||||||||| ||| || |  |||| ||| |||||| |||||||||||    
T  6423328 cttgttcacaataggctaagttcaaatgtttaagctcacgacatttccgtaaaacatgacaaatacc 6423394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 596
Target Start/End: Complemental strand, 8913723 - 8913599
Alignment:
Q  476 actaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaa----aaatcggctcttttaagaaccaaatgttg 571  Q
    ||||||||||||||| ||||||| |||||||||| ||| ||||  | |||||||  |||| |||| |    ||||  |  || |||||||||||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcattcatatataaaataagtgctattaagaaccaaatgttg 8913624  T
Q  572 gatacgttgacacttggataacaaa 596  Q
     | || |||||||||||||||||||    
T  8913623 taaacattgacacttggataacaaa 8913599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 9411367 - 9411450
Alignment:
Q  60 tctttgagatttcatagagtgcttcatcgtcaac-cct-tatatgacaagttcaacacctccagtttaagaacttcaaagttca 141  Q
    |||||||||| |||||||||  |||||||  ||| ||| ||||||||||||||||||||||||| ||  |||| ||||||||||    
T  9411367 tctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaacctcaaagttca 9411450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 509
Target Start/End: Original strand, 6432557 - 6432629
Alignment:
Q  437 gagtgcaaacaaggctgattctgtgagcata-ctacattcactaaggtttatagaaaccaaatcaccaagaaac 509  Q
    ||||| ||||| ||||||||||||||| ||| | ||| | ||||||||||||||| ||||||||| ||||||||    
T  6432557 gagtgaaaacagggctgattctgtgag-atatcgacaattactaaggtttatagacaccaaatcagcaagaaac 6432629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 21 - 293
Target Start/End: Complemental strand, 41901661 - 41901390
Alignment:
Q  21 tacaattttgtagtgacaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaaccctt--atatgacaagttcaacacctc 118  Q
    |||||| ||| |||||||||| ||||||  ||  ||| |||||||||||   ||| ||||||||||| |||||  ||  |||||||||||||||||||||    
T  41901661 tacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctc 41901562  T
Q  119 cagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaa 218  Q
    ||||||  ||||||||||||  ||| ||   ||  ||| ||| |||||||  | |||||||||||||||||| ||| ||||  ||||||||||||||  |    
T  41901561 cagtttgggaacttcaaagtctatttct---agtctcactatggaacacttggataagttcaaatgtctaatgttacaacacatccttaaaacttgaaca 41901465  T
Q  219 ataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacatt 293  Q
    |||||||||||| |||||  |   ||| |||||||||||||||| || |||||||| ||| ||||||| ||||||    
T  41901464 ataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaattggggaaaatggaagcgaacatt 41901390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 32267448 - 32267699
Alignment:
Q  21 tacaattttgtagtgacaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctc 118  Q
    |||||||||  |||||||||| ||||||| ||  ||| |||||||||||   ||| ||||||||||| |||||  || | ||  |||||||||| |||||    
T  32267448 tacaatttttaagtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctc 32267547  T
Q  119 cagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaa 218  Q
    || |||  ||||||||||||||||| ||   || |||| | |||||||||| | |||||||||||||||||| ||| ||||| ||||||||| ||||       
T  32267548 caatttgggaacttcaaagttcatttct---agtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaaattgaacg 32267644  T
Q  219 ataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgg 273  Q
    ||||||||||||||||||  |   ||| |||||||||||||||| || |||||||    
T  32267645 ataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaattgg 32267699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 59 - 297
Target Start/End: Complemental strand, 41889642 - 41889402
Alignment:
Q  59 ctctttgagatttcatagagtgcttcatcgtcaaccctt--atatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 156  Q
    ||||||||||| | ||| |||| |||||| |||||  ||  |||||| |||||||||||||||| |||  |||||| |||||||||| |  | |||||||    
T  41889642 ctctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttca 41889543  T
Q  157 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatc 256  Q
     |||||||||    | ||||||||||| |||||| ||| ||||| ||||||||||||||  ||||||||| ||| |||||  |   ||| ||||||||||    
T  41889542 ctattgaacatccggataagttcaaatatctaatgttacaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatc 41889443  T
Q  257 aagcagttgaaaattgggaaaattggaagcaaacattatga 297  Q
    ||| || || ||||| || ||| ||||||||||||||||||    
T  41889442 aagtagctgcaaattagggaaaatggaagcaaacattatga 41889402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 28525116 - 28525187
Alignment:
Q  151 gcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaatac 222  Q
    |||||||||||||||| |    ||| |||||||  || |||||| |||||||||||||||||||||||||||    
T  28525116 gcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctccttaaaacttgacaaatac 28525187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 518
Target Start/End: Original strand, 28532084 - 28532195
Alignment:
Q  407 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaaga 506  Q
    |||||||  |||||||||||| |||  |  |||||||||||| | ||||||||| ||| ||  ||| | ||||||||| || || | |||||||||||||    
T  28532084 gatctcaccaagtaaaggacagttcctagcgagtgcaaacaaagatgattctgttagcttatcacaattactaaggttgatggacatcaaatcaccaaga 28532183  T
Q  507 aacgaagtcaac 518  Q
    ||||||| ||||    
T  28532184 aacgaagacaac 28532195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 51113906 - 51113700
Alignment:
Q  22 acaattttgtagtgacaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttatat--gacaagttcaacacctcc 119  Q
    ||||||||  ||| ||| |||||||||| ||  ||| ||||| |||||  ||||||||| |||||| |||||| || |||  |||||||  |||||||||    
T  51113906 acaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctcc 51113807  T
Q  120 agtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaa 219  Q
    |||||  || ||||||||||||||||  | ||||||| | ||||||| | |||||| |||||||| ||||| ||| |||||||| |||||||||||||||    
T  51113806 agtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaa 51113707  T
Q  220 taccttc 226  Q
    |||||||    
T  51113706 taccttc 51113700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 101 - 297
Target Start/End: Complemental strand, 13470776 - 13470583
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    ||||||||||||||||||||| ||  ||||  |||||||||||||  | ||||||| | ||  ||| |  |||||||||||||| ||||||||| |||||    
T  13470776 tgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacat 13470677  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 297  Q
     |||||||||||||||||||||||| |   |||| |  | ||||||   ||||||||||||| || |||||||| ||||||||||||||||||||||    
T  13470676 atccttaaaacttgacaaatacctttt---gataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacattatga 13470583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 51121005 - 51120827
Alignment:
Q  35 gacaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctccagtttaagaactt 132  Q
    ||||||||||||||| || |||| |||||||||||| |||| |||  |||||| ||||| ||| ||||  |||||||||||||||||| ||| |||||||    
T  51121005 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 51120906  T
Q  133 caaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaac 211  Q
    |||||||||||||  |||| |||| | |||||||    |  |||||||| |||||||| ||| ||||||||| ||||||    
T  51120905 caaagttcattccatgcagtttcactcttgaacaaccggtgaagttcaagtgtctaatgttacaacatctccataaaac 51120827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 297
Target Start/End: Complemental strand, 51764485 - 51764291
Alignment:
Q  100 atgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaaca 199  Q
    |||||||||  ||||||||||| ||  ||||| |||||||||||||  | ||||||| | ||||||| |  | || ||||||||| ||||||||||||||    
T  51764485 atgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcggataggttcaaatgcctaatcttagaaca 51764386  T
Q  200 tctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 297  Q
    |||||||||||||| ||| | ||   ||| |||||||  | |||||    | ||||||||||| || |||||||| ||| ||||||||||||||||||    
T  51764385 tctccttaaaacttcacagacac---ctttagatatgcgattgcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacattatga 51764291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 295
Target Start/End: Complemental strand, 514764 - 514578
Alignment:
Q  109 tcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaa 208  Q
    |||||||||| ||||| ||||||  || |||||| ||   || ||||| | |||| || || |||||||||||||| ||||||||||| |||||| ||||    
T  514764 tcaacacctcaagtttgagaactctaatgttcataccgtacaacttcactcttgagcagtgggctaagttcaaatgcctaatcttagaccatctctttaa 514665  T
Q  209 aacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaatt-gggaaaattggaagcaaacattat 295  Q
    ||||||||| |||| ||  ||||||||||||   |||  |||||||||||  || || ||||| ||||||||| ||||||||||||||    
T  514664 aacttgacagatacttttgtcagatatgttatcacaatagctcaaatcaattagctgcaaattcgggaaaatt-gaagcaaacattat 514578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 1657305 - 1657460
Alignment:
Q  100 atgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaaca 199  Q
    ||||||||| |||||||||||||||  ||||||||||||||| |   || ||||||| | ||    |  ||| ||| |||||||||||||| ||| ||||    
T  1657305 atgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtctt----agcgagttaaattcaaatgtctaatgttacaaca 1657400  T
Q  200 tctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaag 259  Q
    | || ||||||| |||  ||||||||||||||||||||   |||||  ||||||||||||    
T  1657401 tatcattaaaacatgaacaataccttcttcagatatgtctttgcaatggctcaaatcaag 1657460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 171 - 297
Target Start/End: Complemental strand, 1037638 - 1037512
Alignment:
Q  171 gctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaat 270  Q
    ||||| ||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||  |||   |||||||||||| | ||| ||||    
T  1037638 gctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaat 1037539  T
Q  271 tgggaaaattggaagcaaacattatga 297  Q
    |||| ||| |||||||||||| |||||    
T  1037538 tggggaaaatggaagcaaacaatatga 1037512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 63 - 292
Target Start/End: Complemental strand, 32785856 - 32785628
Alignment:
Q  63 ttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattat 160  Q
    |||||||  |||| ||||||||||| ||||  ||| ||||  |||||||||||||||| |||||  || ||| |||||||||||  ||  |||  ||| |    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattcgacggtgctcgattct 32785757  T
Q  161 tgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagc 260  Q
    |||| | ||  | || ||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||  ||||  ||||||||||||     
T  32785756 tgaaaagtggtccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagt 32785660  T
Q  261 agttgaaaattgggaaaattggaagcaaacat 292  Q
    ||||| ||||||| |||| | |||| ||||||    
T  32785659 agttgcaaattggaaaaaatagaagaaaacat 32785628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 437 - 518
Target Start/End: Complemental strand, 1037354 - 1037273
Alignment:
Q  437 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 518  Q
    ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  1037354 gagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaac 1037273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 45245192 - 45244994
Alignment:
Q  40 ttgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtcaacccttatat--gacaagttcaacacctccagtttaagaacttcaaag 137  Q
    |||||||||| || |||| |||||||||||  ||| ||||| |||||| |||||| || | |  ||||| ||||||||||| |||||  |||||||||||    
T  45245192 ttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaag 45245093  T
Q  138 ttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatg 236  Q
    || ||||| || |  | || | |||||||   | ||||||| ||||| ||||| ||| |||||||||||||||| ||||| || |||||| ||| ||||    
T  45245092 tttattccacgtaattccagtcttgaacagcaaactaagtttaaatgcctaatgttacaacatctccttaaaacatgacacattccttctccagttatg 45244994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 60 - 297
Target Start/End: Complemental strand, 19468586 - 19468350
Alignment:
Q  60 tctttgagatttcatagagtgcttcatcgtcaacccttatat--gacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcat 157  Q
    ||||||||||  |||| |||| |||||| |||||| || |||  ||||| |||||||||||||| ||  ||||| ||||||||| |||  | || ||||     
T  19468586 tctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcac 19468487  T
Q  158 tattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatca 257  Q
    | ||||||| || |||||||| ||||| ||||| |||||||| |||||||||||||||||||| |   |||| |||||||   ||||   | ||||||||    
T  19468486 tcttgaacagtgggctaagtttaaatgcctaatattagaacacctccttaaaacttgacaaatgc---cttccgatatgtggttgcatgagttcaaatca 19468390  T
Q  258 agcagttgaaaattgggaaaattggaagcaaacattatga 297  Q
    ||||| || |||||||||||| ||||||||||||||||||    
T  19468389 agcagctgcaaattgggaaaaatggaagcaaacattatga 19468350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 176 - 297
Target Start/End: Original strand, 9581198 - 9581319
Alignment:
Q  176 gttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggga 275  Q
    ||||||||||||||||| | |||||||  ||||||||||||||||||||  || ||||||||||  ||||  || || ||||||||| || ||||||||     
T  9581198 gttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaattgggg 9581297  T
Q  276 aaattggaagcaaacattatga 297  Q
    ||| | ||||||||||||||||    
T  9581298 aaaattgaagcaaacattatga 9581319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 176 - 297
Target Start/End: Original strand, 9586766 - 9586887
Alignment:
Q  176 gttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggga 275  Q
    ||||||||||||||||| | |||||||   |||||||||||||||||||  || ||||||||||  ||||  || || ||||||||| || ||||||||     
T  9586766 gttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaattgggg 9586865  T
Q  276 aaattggaagcaaacattatga 297  Q
    ||| | ||||||||||||||||    
T  9586866 aaaattgaagcaaacattatga 9586887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 286
Target Start/End: Original strand, 7554546 - 7554659
Alignment:
Q  173 taagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattg 272  Q
    |||||||||||||||||| |||  |||||| |||||||  ||| |||||||||||| |||||||| |  |||| |  ||||||||||||| |  ||||||    
T  7554546 taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg 7554645  T
Q  273 ggaaaattggaagc 286  Q
    |||||  |||||||    
T  7554646 ggaaagatggaagc 7554659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 597
Target Start/End: Complemental strand, 19468166 - 19468038
Alignment:
Q  469 tacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaaaaatcggctcttttaagaaccaaatg 568  Q
    |||||||||||||||||||||| || ||||||||||||||| ||| ||||    |||||| | |||| ||||||||  | || | || |||| |||||||    
T  19468166 tacattcactaaggtttatagacactaaatcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatg 19468067  T
Q  569 ttggatacgttgacacttggataacaaac 597  Q
    ||| | || |  |||||||||||||||||    
T  19468066 ttgcaaacctgcacacttggataacaaac 19468038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 438 - 546
Target Start/End: Original strand, 33160914 - 33161022
Alignment:
Q  438 agtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctt 537  Q
    |||| |||||| ||||||||||||||| | | |||| || ||||||||||||| |||||| || |||||||| |||  |||  |||||||||  |||| |    
T  33160914 agtgaaaacaatgctgattctgtgagcctccaacatccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgttgatcat 33161013  T
Q  538 tcaaaaaat 546  Q
    ||| |||||    
T  33161014 tcagaaaat 33161022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 101 - 295
Target Start/End: Original strand, 10614648 - 10614839
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    ||||||||||||||||||||| ||  ||||  ||| |||||||||  | ||||||| | ||  ||| |  |||||||||||||| ||||||||| |||||    
T  10614648 tgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacat 10614747  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattat 295  Q
     |||||||||||||||||||||   ||||| ||| |  | ||||||   |||||||||||||||| |||||||| ||||||||||||||| ||||    
T  10614748 atccttaaaacttgacaaatac---cttcatataagagattgcaacgattcaaatcaagcagttgcaaattggggaaattggaagcaaactttat 10614839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 7977703 - 7977764
Alignment:
Q  171 gctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcaga 232  Q
    |||| ||| ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  7977703 gctaggtttaaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcaga 7977764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 297
Target Start/End: Complemental strand, 10170115 - 10169981
Alignment:
Q  160 ttgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaag 259  Q
    ||||||| || ||||| || ||||| ||||| |||||||| |||||||||||||||||||| |   |||| ||||||| | |||||  | |||||||||     
T  10170115 ttgaacagtgggctaaatttaaatgcctaatattagaacacctccttaaaacttgacaaatgc---cttccgatatgtgattgcaagagttcaaatcaaa 10170019  T
Q  260 cagttgaaaattgggaaaattggaagcaaacattatga 297  Q
    ||| |  ||||| |||||| |||||| |||||||||||    
T  10170018 cagcttcaaattaggaaaaatggaagaaaacattatga 10169981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 297
Target Start/End: Complemental strand, 10177640 - 10177506
Alignment:
Q  160 ttgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaag 259  Q
    ||||||| || ||||| || ||||| ||||| |||||||| |||||||||||||||||||| |   |||| ||||||| | |||||  | |||||||||     
T  10177640 ttgaacagtgggctaaatttaaatgcctaatattagaacacctccttaaaacttgacaaatgc---cttccgatatgtgattgcaagagttcaaatcaaa 10177544  T
Q  260 cagttgaaaattgggaaaattggaagcaaacattatga 297  Q
    ||| |  ||||| |||||| |||||| |||||||||||    
T  10177543 cagcttcaaattaggaaaaatggaagaaaacattatga 10177506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 15092123 - 15092071
Alignment:
Q  173 taagttcaaatgtctaatcttagaacatctccttaaaacttgacaaatacctt 225  Q
    ||||||||||||| ||| |||| ||||| |||||||||||||| |||||||||    
T  15092123 taagttcaaatgtttaagcttataacatttccttaaaacttgagaaatacctt 15092071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 101 - 275
Target Start/End: Complemental strand, 668 - 494
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    ||||||||| |||||||| | || | |||||| |||||| ||||   | || |||| | ||||||| |  ||||| ||||||||||||  |||| |||||    
T  668 tgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctagccttacaacat 569  T
Q  201 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggga 275  Q
    ||||||| ||||| |||||||||||||||||||||||||  |||   |||||||||||| | ||| |||||||||    
T  568 ctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgtaaattggga 494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 1438 - 1388
Alignment:
Q  171 gctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaata 221  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1438 gctaagttcaaatgtctaatcttataacatctccttaaaacttgacaaata 1388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 88813 - 88881
Alignment:
Q  22 acaattttgtagtgacaattgcaaaagctcaggacacctctttgagatttcatagagtgcttcatcgtc 90  Q
    ||||||||||||| |||||||||||||| || ||||||||||||||||  ||| |||||||||||||||    
T  88813 acaattttgtagttacaattgcaaaagcccatgacacctctttgagatcacatggagtgcttcatcgtc 88881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 88933 - 88998
Alignment:
Q  163 aacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttctt 228  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||  |||  |||||||||||    
T  88933 aacactcagttaagttcaaatgtctaatcttacaacatctccttaaaatctgatcaataccttctt 88998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 466
Target Start/End: Original strand, 89137 - 89196
Alignment:
Q  407 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcat 466  Q
    ||||||| | ||| ||||| | |||| ||||||||||||||||||||| |||||||||||    
T  89137 gatctcactgagtgaaggatagttctaattgagtgcaaacaaggctgagtctgtgagcat 89196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 437 - 518
Target Start/End: Original strand, 326 - 407
Alignment:
Q  437 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 518  Q
    ||||||||||| || ||| | ||||||||| |||||||||||||| |||||||| |||||||| ||||||||| ||| ||||    
T  326 gagtgcaaacatggttgagtatgtgagcatgctacattcactaagatttatagacaccaaatcgccaagaaacaaagacaac 407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 232
Target Start/End: Original strand, 496 - 627
Alignment:
Q  101 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 200  Q
    |||||||||||||  ||||||||||  ||||||||||||||||   || ||| ||| | ||||| |||  ||||||||||| | |||||| | | |||||    
T  496 tgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacat 595  T
Q  201 ctccttaaaacttgacaaataccttcttcaga 232  Q
    || ||||||| ||| |||||| ||||||||||    
T  596 ctacttaaaatttgtcaaatatcttcttcaga 627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University