View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_low_6 (Length: 566)
Name: NF14132_low_6
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 12492975 - 12492780
Alignment:
| Q |
11 |
gtagcataggcatgatgtgggaggaggtggttgttagttgatatttatctcttcaatccaactgattgacatactactaacactattatcagggcaaatc |
110 |
Q |
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| T |
12492975 |
gtagcgtaagcatgatgtgggaggaggtggctgttagttgatatttatctcttcaatccaactgattgacttactgctaacactattatcagggcaactc |
12492876 |
T |
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| Q |
111 |
cgccttcggaggccattttcggccaccataacgtcaaattatgaagtaacaccaaatcaaactccttctcatttcatctataaaaattcgtgaatg |
206 |
Q |
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| T |
12492875 |
cgccttcagaggccattttcggccaccataacgtcaaattatgaagtaacaccaaatcaaactccttctcatttcatctacaaaaattcgtgaatg |
12492780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 343 - 529
Target Start/End: Complemental strand, 12491733 - 12491544
Alignment:
| Q |
343 |
tttatttagaacaacacgtattgacataataaatacaaaatttatgcgtcaaaaggtaataccttattatgctacttgtctatccattgattcatcggca |
442 |
Q |
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| T |
12491733 |
tttatgtagaacaacacgtaatgacataataaatacaaaatttatgcgtcaaaaggtaatatcttattatgctacttgtcgatccattgattcatggtca |
12491634 |
T |
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| Q |
443 |
caaagttgttgaacagagggcattaaaatcaacaaataaaattacaattttgattcagagtttcgtct---cggttctcatataattaat |
529 |
Q |
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| T |
12491633 |
caaagttgttgaacagagggtgttaaaatcaacatataaaattacaattttggtttaaagtttcgtctcgacggttctcatataattaat |
12491544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 256 - 333
Target Start/End: Complemental strand, 12492288 - 12492211
Alignment:
| Q |
256 |
atgtctattaaccaaagtcatatttcctctttgtatttaattttaaatgttaaccccgaccaaatagttaacttccat |
333 |
Q |
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| T |
12492288 |
atgtctattaaccaaagtcatatttcctctttgtatttaattttaaatgttaaccccgaacaaatagttaacttccat |
12492211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 494
Target Start/End: Complemental strand, 34580309 - 34580280
Alignment:
| Q |
465 |
ttaaaatcaacaaataaaattacaattttg |
494 |
Q |
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| T |
34580309 |
ttaaaatcaacaaataaaattacaattttg |
34580280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 493
Target Start/End: Original strand, 9557745 - 9557814
Alignment:
| Q |
424 |
atccattgattcatcggcacaaagttgttgaacagagggcattaaaatcaacaaataaaattacaatttt |
493 |
Q |
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| T |
9557745 |
atccattgattcatggtcacaaagttgttgtacacatggtgttaaattcaacaaatgaaattataatttt |
9557814 |
T |
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