View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_low_7 (Length: 493)
Name: NF14132_low_7
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_low_7 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 9 - 493
Target Start/End: Original strand, 43063552 - 43064037
Alignment:
| Q |
9 |
gaagaatatttcacagaacacatacaatctttaatagggcataaagcctataattcatcccaaagggttttcaaataagtgaaaagattagttacatatc |
108 |
Q |
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| T |
43063552 |
gaagaatatttcacagaacacatacaatctttaatagggcataaagcctataattcatcccaaagggttttcaaataagtgaaaagattagttacatatc |
43063651 |
T |
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| Q |
109 |
gtacatcttgtttgacagagttcatttctttaagaagacctgaaaactgaaaatggctgcctttggtaaatcgttctttgagattatcccagtgttttgg |
208 |
Q |
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| T |
43063652 |
gtacatcttgtttgaaagagttcatttctttaagaagacctgaaaactgaaaatggttgcctttggtaaatcgttctttgagattatcccagtgttttgg |
43063751 |
T |
|
| Q |
209 |
cattgtcgatttagtcaaccctagaagcaatttgaggtggacgacagcgattaatccaagataccaccaagctgttacattgttcccaagaatcgaactt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43063752 |
cattgtcgatttagtcaaccctagaagcaatttgagatggaagacagcgattaatccaagataccaccaagctgttacattgttcccaagaatcgaactt |
43063851 |
T |
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| Q |
309 |
aacatcatcttagttccatggtggaaggatttgattaacaaaaaggcatgaatgtggaagcataaaatgatgcgcttaataccatatagag-aaattatg |
407 |
Q |
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| T |
43063852 |
aacatcatcttagttccatggtggaaggatttgattaacaaaaaggcatgaatgtggaagcataaaatgatgcgcttaataccatatagagaaaattatg |
43063951 |
T |
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| Q |
408 |
aacaaaatgatttttgctcattgattgtaaatgatctatttacaacaaattgatgagggaaaaatatagctagagattaactaacc |
493 |
Q |
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| T |
43063952 |
aacaaaatgatttttgctcattgattgtaaatgatctatttacaacaaattgatgagggaaaaatatagttagagattaactaacc |
43064037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 202 - 453
Target Start/End: Complemental strand, 43182590 - 43182324
Alignment:
| Q |
202 |
gttttggcattgtcgatttagtcaaccctagaagcaatttgaggtg---gacgacagcgattaatccaagataccaccaagctgttacattgttcccaag |
298 |
Q |
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||||||||||||||| |||||||| | ||||||| ||||||||||| || |||||| | |||||||| |||| | || |||||||||| ||||||| |
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| T |
43182590 |
gttttggcattgtcggtttagtcagcgctagaagaaatttgaggtgaaagaagacagcaagtaatccaatatacaaacatgctgttacatcgttcccata |
43182491 |
T |
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| Q |
299 |
aatcgaacttaacatcatcttagttccatggtggaaggatttgattaacaaaaaggcatgaatgtggaa----gcataaaatgatgcgc-------ttaa |
387 |
Q |
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| T |
43182490 |
aatcgaacttaacatcatcttagttacatggttgaaggatttgattaacaaaaaggcttgaatgtggaagcatgcataaaatgatgcgcctaatggctaa |
43182391 |
T |
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| Q |
388 |
taccatatagag-aaattatgaacaaaatgatttttgctcattgattgtaaatgatctatttacaac |
453 |
Q |
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| T |
43182390 |
taccatatagagaaaatgatgaatagaatgaattgagttcattgattgtaaatgatctagttacaac |
43182324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 182 - 396
Target Start/End: Complemental strand, 43180409 - 43180194
Alignment:
| Q |
182 |
ttctttgagattatcccagtg--ttttggcattgtcgatttagtcaaccctagaagcaatttgaggtggacgacagcgattaatccaagataccaccaag |
279 |
Q |
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| T |
43180409 |
ttctttgagattatcacagagggttttggctttctcgatt-agtgaacgctagaagaaatttgaggcgaaagactgcgattaattcaagatgccactatg |
43180311 |
T |
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| Q |
280 |
ctgttacattgttcccaagaatcgaacttaacatcatcttagttccatggtggaaggatttgattaacaaaaaggcatgaatgtggaagcataaaatgat |
379 |
Q |
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| T |
43180310 |
ccattacatcgttctcaagaattgaacttaacatcatcttagctccatggtggaaggatttgattaacagaaaggcatgaatgcagaagtgtgaaatgat |
43180211 |
T |
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| Q |
380 |
gcgcttaataccatata |
396 |
Q |
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| T |
43180210 |
gcgccgaataccatata |
43180194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 43182710 - 43182592
Alignment:
| Q |
10 |
aagaatatttcacagaacacatacaatctttaatagggcataaagcctataattcatcccaaagggttttcaaataagtgaaaagattagttacatatcg |
109 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| | ||||||||| ||||||| ||||||||||||||| | |
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| T |
43182710 |
aagaatatttcacagaacacatacaatctttaatacggcataaagcctctaattcgtcccatacggttttcaacaaagtgaagagattagttacatattg |
43182611 |
T |
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| Q |
110 |
tacatcttgtttgacagag |
128 |
Q |
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| T |
43182610 |
ttcaccttgtttgaaagag |
43182592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 447 - 493
Target Start/End: Complemental strand, 43182303 - 43182257
Alignment:
| Q |
447 |
ttacaacaaattgatgagggaaaaatatagctagagattaactaacc |
493 |
Q |
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|||||||||||||| ||| |||||||| || |||||||||||||||| |
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| T |
43182303 |
ttacaacaaattgaagagtgaaaaatacagttagagattaactaacc |
43182257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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