View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14132_low_9 (Length: 475)
Name: NF14132_low_9
Description: NF14132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14132_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 15790239 - 15790627
Alignment:
| Q |
30 |
agtggaagaaaccgtccaactgaactcttaaatgtccacgagcttacacgtcgaattgaaaaagtgttgcgactaccagcacaataacggtcaccctaga |
129 |
Q |
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| T |
15790239 |
agtggaagaaaccgtccaactgaactcttaaatgtccacgagcttacacgtcgaatttaaaaagtgttgcgacttccagcacaataacggtcaccctaga |
15790338 |
T |
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| Q |
130 |
gttacagttatccccagtccacatgtgaaaatacagttatcaagaaatttcatcaaataatttcaaatgattatacattaaaattaagggtattttcgta |
229 |
Q |
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| T |
15790339 |
gttacagttatcaccagtccacatgtgaaaatacagttatcaagaaatttcatcaaataatttcaaatgattatatattaaaattaagggtattttcgta |
15790438 |
T |
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| Q |
230 |
taaaagaggtgtaactgaacattcgcctaatgtaacaagaacaaatcatgttcttatgtttatttttaatcaatctggaccctcaccgaagtcatcatga |
329 |
Q |
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| T |
15790439 |
taaaagaggtgtaattgaacattcgcctaatgtaacaagaacaaatcatgttcttatgtttatttttcatcaatctggaccctcaccgaagtcatcatga |
15790538 |
T |
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| Q |
330 |
aattattatactagtacataatattttcaacaaaaaattgcactaaatccaaataacaattttcatgacctaagatccaaacgaacatc |
418 |
Q |
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| T |
15790539 |
aattattatactagtacataatattttcaacaaaaaattgcactaaatccaaataacaattttcatgacctaagatccaaacgaacatc |
15790627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 460
Target Start/End: Original strand, 15790621 - 15790651
Alignment:
| Q |
430 |
gaacatctttgcctgcgctgttaattgatca |
460 |
Q |
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| T |
15790621 |
gaacatctttgcctgcgctgttaattgatca |
15790651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 274 - 405
Target Start/End: Complemental strand, 26757970 - 26757833
Alignment:
| Q |
274 |
atcatgttcttatgtttatttttaatcaatctggaccctcaccgaagtcatcatgaaattattatacta-gta--cataatatttt---caacaaaaaat |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| || || ||| | || ||||||| |
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| T |
26757970 |
atcatgttcttatgtttatttttaatcaatctggaccctcactgaagtcatcatgaaattcttatactacgtaatcaaaaaattatggaaaataaaaaat |
26757871 |
T |
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| Q |
368 |
tgcactaaatccaaataacaattttcatgacctaagat |
405 |
Q |
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| T |
26757870 |
tgcactaaatccaaataacaattttcatagcctaagat |
26757833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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