View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14133_high_1 (Length: 363)

Name: NF14133_high_1
Description: NF14133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14133_high_1
NF14133_high_1
[»] chr8 (1 HSPs)
chr8 (13-346)||(6827204-6827546)
[»] chr6 (1 HSPs)
chr6 (13-346)||(9822598-9822940)
[»] chr1 (2 HSPs)
chr1 (87-346)||(8457791-8458062)
chr1 (13-88)||(8458164-8458238)
[»] chr3 (2 HSPs)
chr3 (235-346)||(27964079-27964189)
chr3 (13-43)||(27964018-27964048)
[»] chr7 (1 HSPs)
chr7 (13-83)||(25802634-25802704)
[»] chr2 (2 HSPs)
chr2 (13-167)||(18361200-18361345)
chr2 (238-301)||(18361361-18361424)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 6827204 - 6827546
Alignment:
Q  13 cagacgccaaaattctatcttgacagaattcctacaaataattgtaacatgagaaaatgaattcaatacctgatatttaacatacttaggacaacatgtt 112  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6827204 cagacgccagaattctatcttgacagaattcctacaaataatggtaacatgagaaaatgaattcaatacctgatatttaacatacttaggacaaaatgtt 6827303  T
Q  113 aggtacctggagaattcccttggttgtgaaagtcaaatccagttgaaagatgtccactgccatcaatccatttgattattagttgcctatggctatctgc 212  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6827304 aggtacctggagaattcccttggttgtg-aagtcaaatccagttgaaagatgtccactgccatcaatccatttgattattcgttgcctatggctatctgc 6827402  T
Q  213 -aaaagtaaaaaataagtgagct---------atgcaaaagaagtaatgagagggtaatgtattcacatacttagtaaccaaaaagtattcatttatttc 302  Q
     ||||||||||||||||||||||         |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6827403 aaaaagtaaaaaataagtgagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcatttatttc 6827502  T
Q  303 atgaatgagaattttaagcataccttggttatagtccaaagtag 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6827503 atgaatgagaattttaagcataccttggttatagtccaaagtag 6827546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 9822940 - 9822598
Alignment:
Q  13 cagacgccaaaattctatcttgacagaattcctacaaataattgtaacatgagaaaatgaattcaatacctgatatttaacatacttaggacaacatgtt 112  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9822940 cagacgccataattctatcttgacagaattcctacaaataatggtaacatgagaaaatgaattcaatacctgatatttaacatacttaggacaaaatgtt 9822841  T
Q  113 aggtacctggagaattcccttggttgtgaaagtcaaatccagttgaaagatgtccactgccatcaatccatttgattattagttgcctatggctatctgc 212  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9822840 aggtacctggagaattcccttggttgtg-aagtcaaatccagttgaaagatgtccactgccatcaatccatttgattattcgttgcctatggctatctgc 9822742  T
Q  213 -aaaagtaaaaaataagtgagct---------atgcaaaagaagtaatgagagggtaatgtattcacatacttagtaaccaaaaagtattcatttatttc 302  Q
     ||||||||||||||||||||||         |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9822741 aaaaagtaaaaaataagtgagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcatttatttc 9822642  T
Q  303 atgaatgagaattttaagcataccttggttatagtccaaagtag 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9822641 atgaatgagaattttaagcataccttggttatagtccaaagtag 9822598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 87 - 346
Target Start/End: Complemental strand, 8458062 - 8457791
Alignment:
Q  87 atttaacatacttaggacaacatgttaggtacctggagaattcccttggttgtgaaagtcaaatccagttgaaagatgtccactgccatcaatccatttg 186  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||| |||||||||| |||||| ||||||||||||| |||    
T  8458062 atttaacatacttaggacaaaatgttgggtacctggagaattcccttcgttgtgaa-gtcaaatgcagttgaaagctgtccagtgccatcaatccaattg 8457964  T
Q  187 attattagttgcctatggctatctgcaaa-agtaaaaaataagtgagct---------atgcaaaagaagtaatgagagggtaatgtattcacatactta 276  Q
    |||||| |||| |||||| |||||||||| ||||||||||||| |||||         ||| ||||||| || ||| |||  |||||||||| |||||||    
T  8457963 attattcgttgtctatggttatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaagaaatattgaaaggccaatgtattcatatactta 8457864  T
Q  277 gtaaccaaaaagtattcatttatttcatgaatgagaattttaagc---ataccttggttatagtccaaagtag 346  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||   |||||||||||||||||||||||||    
T  8457863 gtaaccaaaaagtattcatttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtag 8457791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 8458238 - 8458164
Alignment:
Q  13 cagacgccaaaattctatcttgacagaattcctacaaataattgtaacatgagaaaatgaattcaatacctgatat 88  Q
    |||||||||||||||| |||||||||  |||||||||||||| ||||||||| |||||||||||||||||||||||    
T  8458238 cagacgccaaaattctctcttgacagc-ttcctacaaataatggtaacatgaaaaaatgaattcaatacctgatat 8458164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 27964079 - 27964189
Alignment:
Q  235 atgcaaaagaagtaatgagagggtaatgtattcacatacttagtaaccaaaaagtattcatttatttcatgaatgagaattttaagcataccttggttat 334  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27964079 atgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcattta-ttcatgaatgagaattttaagcataccttggttat 27964177  T
Q  335 agtccaaagtag 346  Q
    ||||||||||||    
T  27964178 agtccaaagtag 27964189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 27964018 - 27964048
Alignment:
Q  13 cagacgccaaaattctatcttgacagaattc 43  Q
    |||||||||||||||||||||||||||||||    
T  27964018 cagacgccaaaattctatcttgacagaattc 27964048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 25802634 - 25802704
Alignment:
Q  13 cagacgccaaaattctatcttgacagaattcctacaaataattgtaacatgagaaaatgaattcaatacct 83  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25802634 cagacgccaaaattctatcttgacagaattcctacaaataatggtaacatgagaaaatgaattcaatacct 25802704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 18361200 - 18361345
Alignment:
Q  13 cagacgccaaaattctatcttgacagaattcctacaaataattgtaacatgagaaaatgaattcaatacctgatatttaacatacttaggacaacatgtt 112  Q
    |||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||           ||||||||||||| ||||| ||| |    
T  18361200 cagacgccaaaattctatcttgacatgattcctacaaataatggtaacatgagaaaatgaattc----------gtttaacatacttaagacaaaatgct 18361289  T
Q  113 aggtacctggaga--attcccttggttgtgaaagtcaaatccagttgaaagatgtcc 167  Q
     ||||||||||||  |||||||||| |||| |||||| || |||||||||| |||||    
T  18361290 gggtacctggagatcattcccttggctgtg-aagtcatatgcagttgaaagttgtcc 18361345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 18361361 - 18361424
Alignment:
Q  238 caaaagaagtaatgagagggtaatgtattcacatacttagtaaccaaaaagtattcatttattt 301  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  18361361 caaaagaagtattgaaagggtaatgtattcacatgcttagtaaccaaaaagtattcatttattt 18361424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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