View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14133_high_2 (Length: 283)
Name: NF14133_high_2
Description: NF14133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14133_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 37400941 - 37400678
Alignment:
| Q |
4 |
aaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaaaat |
103 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37400941 |
aaggttgggtaagatggagtcagcactgctatcaatgttgatagaaagaaaactattatgggaaagatggagaaaccatagtttgtttaattttgaaaat |
37400842 |
T |
|
| Q |
104 |
tggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgtaggt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37400841 |
tggtgaaaatccacaacaccactcaagtttgttgatgacaaatctaagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgtaggt |
37400742 |
T |
|
| Q |
204 |
tgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
|||| ||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37400741 |
tgttattagagagaagcaaatattgcaaagaatatgttgaaaactcaccaatgaaccctgtgag |
37400678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 4 - 267
Target Start/End: Original strand, 37711721 - 37711984
Alignment:
| Q |
4 |
aaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaaaat |
103 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
37711721 |
aaggttgggtatgatggagtcaatactgctatcaatgttgatagaaagaaaagtattgtgtgaaagaacgagataccatagtttgtttaattttgaaaat |
37711820 |
T |
|
| Q |
104 |
tggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgtaggt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37711821 |
tggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttgaaatattgaatttggaaaatgaccttgtaggt |
37711920 |
T |
|
| Q |
204 |
tgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37711921 |
tgttattagagagatccaaagattgcaaagaatatgttgagaactcaccaatgaaccctgtgag |
37711984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 37533194 - 37533460
Alignment:
| Q |
1 |
aacaaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| || | | ||||||||||||||||||| |
|
|
| T |
37533194 |
aacaaggttgggtaagatggagtcaacattgctattaatgttgatagaaagaaaactattatgggaaagatcaagggaacctagtttgtttaattttgaa |
37533293 |
T |
|
| Q |
101 |
aattggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37533294 |
aattggtgaaaatccacaacaccacttaagtttgtggatgacaaatataagtcggtaagattttggagttgaaatattgaatttggaaaatgaccttgta |
37533393 |
T |
|
| Q |
201 |
ggttgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37533394 |
ggttgttattagagagatccaaatattgcaaagaatatgttgaaaactcaccaatgaaccctgtgag |
37533460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 267
Target Start/End: Original strand, 37639968 - 37640232
Alignment:
| Q |
3 |
caaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaaaa |
102 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| || ||||||| || | | ||||||||||||||||||||| |
|
|
| T |
37639968 |
caaggttgggtaagatggagtcagcactgctatcaatgttgatagaaagaaaactattatgggaaagatcaagggaacttagtttgtttaattttgaaaa |
37640067 |
T |
|
| Q |
103 |
ttggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgtagg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37640068 |
ttggtgaaaatccacaacaccactcaagtttgttgatgacaaatctaagtaagtaagattttggagttgaaatattgaatttggaaaatgaccttgtagg |
37640167 |
T |
|
| Q |
203 |
ttgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
||||| ||| |||||| |||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640168 |
ttgttattaaagagatacaaagattgcaaagaatatgttgagaactcaccaatgaaccctgtgag |
37640232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 37696815 - 37697081
Alignment:
| Q |
1 |
aacaaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||||||||| ||||||| |||||||||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
37696815 |
aacaaggttgggtaagatggagtcagcactgctatcagtgttgatagcaagaaaagtattgtgtgaaagaacgagatgccatagtttttttaattttgaa |
37696914 |
T |
|
| Q |
101 |
aattggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37696915 |
aattggtgaaaatccacaacaccactcaagttggttgatgacaaatataactcggtaaggttttggagttgaaatattgaatttggaaaatgaccttgta |
37697014 |
T |
|
| Q |
201 |
ggttgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697015 |
ggttgttattagagagatgcaaagattgcaaagaatatgttgagaactcaccaatgaaccctgtgag |
37697081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 37392955 - 37392692
Alignment:
| Q |
4 |
aaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaaaat |
103 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
37392955 |
aaggttaggtaagatggtgtcaacactgctatcaatgttgatagaaagaaaaccattgtgtgaaagatagagataccatagtctgtttaattttgaaaat |
37392856 |
T |
|
| Q |
104 |
tggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgtaggt |
203 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37392855 |
tggtgaaaatccacaacaccacttaagtttgttgaagacaaatctaagttggtaagattttggagttcaaatattgaatttggaaaatgaccatgtaggt |
37392756 |
T |
|
| Q |
204 |
tgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
|||| || ||||||| |||| || ||||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
37392755 |
tgttatttgagagatacaaagattgcaaagaataagttgaaaactcatcaatgaaccctgtgag |
37392692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 37594418 - 37594681
Alignment:
| Q |
1 |
aacaaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
37594418 |
aacaaggttgggtaagatggagtcagcactgctatcaaagttgatagaaagaaaactattgtgtgaaagatggagatattctagtttgtttaattttgaa |
37594517 |
T |
|
| Q |
101 |
aattggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgta |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
37594518 |
aattggtgaaaatcgacaacaccactcaagttggttgatgacaaagttaagtaagatagattttggagttgaaatattgaatttggaaaatgaccatgta |
37594617 |
T |
|
| Q |
201 |
ggttgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgt |
264 |
Q |
| |
|
|| |||| ||||||||| ||||| || ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37594618 |
ggctgttattagagagaaacaaatattgcaaagaatatgttgaaaactcaccaatgaaccctgt |
37594681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 37702762 - 37703028
Alignment:
| Q |
1 |
aacaaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||| ||| | |||||| |||||||||||| |
|
|
| T |
37702762 |
aacaaggttgggtaagatggagtcagcactgctatcaatgttgatagaaataaaactattgtgtgaaagaatgagggaatttagtttttttaattttgaa |
37702861 |
T |
|
| Q |
101 |
aattggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgta |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
37702862 |
aattggtgaaaatccacgacaccactcaagtttgttgacgacaaatctaagttggtaagattttggagttcatatattgaatttggaaaatgaccatgta |
37702961 |
T |
|
| Q |
201 |
ggttgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37702962 |
ggttgttactagagagatccaaagattgcaaagaatatgttgagaactcaccaatgaaccctgtgag |
37703028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 4 - 267
Target Start/End: Original strand, 37823992 - 37824255
Alignment:
| Q |
4 |
aaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaaaat |
103 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| ||||||||| ||||||| |||||||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
37823992 |
aaggttgggtaagatggagtcagcactgctatcagtgttgatagcaagaaaagtattgtgtgaaagaacgagggaatttagtttgtttaattttgaaaat |
37824091 |
T |
|
| Q |
104 |
tggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgtaggt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
37824092 |
tggtgaaaatccacaacaccactcaagtttgttgatgacaaaattaactcggtaagattttggagttgaaatattgaatttggaaaatgacctcgtaggt |
37824191 |
T |
|
| Q |
204 |
tgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
|||| |||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37824192 |
tgttattagagagatccaaatattgcaaagaatatgttgaaaactcaccaatgaaccctgtgag |
37824255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 267
Target Start/End: Original strand, 37435803 - 37436067
Alignment:
| Q |
3 |
caaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaaaa |
102 |
Q |
| |
|
||||||||||||||||||||||| || |||||| | ||||||||||||||||||||||||| ||||||| ||| | ||| || || | ||||||||| |
|
|
| T |
37435803 |
caaggttgggtaagatggagtcagcactgctattagtgttgatagaaagaaaactattgtgcgaaagattgaggagaattagatttttaagttttgaaaa |
37435902 |
T |
|
| Q |
103 |
ttggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgtagg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
37435903 |
ttggtgaaaatccacaacaccactcaagtttgttgatgacaaatctaattcagtaagattttggagttgaaatattgaatttgaaaaatgaccttctagg |
37436002 |
T |
|
| Q |
203 |
ttgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
||||| || |||||| |||| || |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37436003 |
ttgttatttgagagagtcaaagattgaaaagaatatgttgaaaactcaccaatgaaccctgtgag |
37436067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 267
Target Start/End: Complemental strand, 37413320 - 37413056
Alignment:
| Q |
3 |
caaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaaaa |
102 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||||||| |||||||||| | ||| | ||||||| || || |||||| | || |||||||| |
|
|
| T |
37413320 |
caaggttgggtgagatggagtcaacactgctaccaatgttgacagaaagaaaattgttgcgggaaagatcaaggaaagttagtttttcaaaatttgaaaa |
37413221 |
T |
|
| Q |
103 |
ttggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgtagg |
202 |
Q |
| |
|
||| ||||| |||||| | || |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
37413220 |
ttgatgaaagtccacatcgccgttcaagtttgttgatgacaaacctaagtaagtaagattttggaatttaaatattgaatttggaaaatgaccatgtaac |
37413121 |
T |
|
| Q |
203 |
ttgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
||||| ||||||||| ||| | || ||| ||||| ||||||||||| |||||| ||||| |||| |
|
|
| T |
37413120 |
ttgttattagagagaagcaatttttgcaacgaataagttgagaactctccaatggaccctctgag |
37413056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 37382399 - 37382185
Alignment:
| Q |
3 |
caaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaaaa |
102 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||| ||||||| || || |||| || || | |||||||| |
|
|
| T |
37382399 |
caaggttgggtaagatggagtcaactctgctttcaatattgatagaaagcaaactattgtgggaaagatcaaggaaaaatagcttcttacaatttgaaaa |
37382300 |
T |
|
| Q |
103 |
ttggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgtagg |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||| ||||| | ||||||||| | || | |||||||||||||||||| ||||| || | |
|
|
| T |
37382299 |
ttggtgaaagtccacaacaccactcaagttggttgatgacaatcctaagtcaaaaagattttgtaatttatatattgaatttggaaaatcaccttttatg |
37382200 |
T |
|
| Q |
203 |
ttgttgttagagaga |
217 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
37382199 |
ttgttattagagaga |
37382185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 37428840 - 37429025
Alignment:
| Q |
15 |
agatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaaaattggtgaaaatc |
114 |
Q |
| |
|
|||||||||||| ||| || |||| ||||||||||||||| |||||||| ||||||| ||| || ||| || || || ||||| | || ||| || |
|
|
| T |
37428840 |
agatggagtcaatattactgtcaaagttgatagaaagaaagctattgtgcgaaagatcgaggaaagtaagtaatttaaacttagaaaaattgtaaaagtc |
37428939 |
T |
|
| Q |
115 |
cacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgta |
200 |
Q |
| |
|
|| ||||| |||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
37428940 |
tactacacctctcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatttggaaaaggaccatgta |
37429025 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 37400679 - 37400612
Alignment:
| Q |
200 |
aggttgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
|||| ||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37400679 |
aggtggttattagagagatccaaatattgcaaagaatatgttgagaactcaccaatgaaccctgtgag |
37400612 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 37697080 - 37697147
Alignment:
| Q |
200 |
aggttgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
|||| ||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697080 |
aggtggttattagagagatccaaatattgcaaagaatatgttgagaactcaccaatgaaccctgtgag |
37697147 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 16842939 - 16842676
Alignment:
| Q |
4 |
aaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaaaat |
103 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||| |
|
|
| T |
16842939 |
aaggttgggtaagatggagtcagcaatgctatcagtgttgatagaaagaaaagtattgtgtgaaagatcgagataccctagtttgtttaattttgaaaat |
16842840 |
T |
|
| Q |
104 |
tggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgtaggt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16842839 |
tggtgaaaatccacaacaccactcaagtttgttgatgataaatctagggcggtaagattttggagttcaaatattgaatttggaaaatggccttgtaggt |
16842740 |
T |
|
| Q |
204 |
tgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16842739 |
tgttattagagagatacaaagacttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
16842676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 24217712 - 24217594
Alignment:
| Q |
95 |
tttgaaaattggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgac |
194 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||| |||| || ||||||||| || | | |||||||||||| ||||| || |
|
|
| T |
24217712 |
tttgaaaattggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcac |
24217613 |
T |
|
| Q |
195 |
cttgtaggttgttgttaga |
213 |
Q |
| |
|
|||| || ||||| ||||| |
|
|
| T |
24217612 |
cttgcagattgttattaga |
24217594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 14553204 - 14553470
Alignment:
| Q |
1 |
aacaaggttgggtaagatggagtcaacattgctatcaatgttgatagaaagaaaactattgtgtgaaagatggagaaaccatagtttgtttaattttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||||||||| ||| | |||||| |||||||||||| |
|
|
| T |
14553204 |
aacaaggttgggtaagatggagttagcactgctatcaatgttgatagaaataaaactattgtgtgaaagatcgagggaatttagtttttttaattttgaa |
14553303 |
T |
|
| Q |
101 |
aattggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14553304 |
aattggtgaaaatccacaacaccactcaagtttgtggatgacaaatataagtcggtaagattttggagttcaaatattgaatttggaaaatgaccttgta |
14553403 |
T |
|
| Q |
201 |
ggttgttgttagagagatccaaatctttcaaagaatatgttgagaactcaccaatgaaccctgtgag |
267 |
Q |
| |
|
||||||| || |||||||||||| || ||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
14553404 |
ggttgttatttgagagatccaaagattgcaaagaataagttgaaaactcaccaatgaaccctgtgag |
14553470 |
T |
|
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