View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14133_low_1 (Length: 575)
Name: NF14133_low_1
Description: NF14133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14133_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 352
Target Start/End: Complemental strand, 42677579 - 42677241
Alignment:
| Q |
7 |
caaaaccctaatgaaaacaatacaaaaacactttcacatttcacaattagaagggaggaggaataaaa----taatttctaaaaatcattatcaagcaca |
102 |
Q |
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| T |
42677579 |
caaaaccctaatgaaaacaatacaaaaacactttcacacttcacaataagaagggaggaggaataaaaaatataatttctaaaaatcattatcaagcaca |
42677480 |
T |
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| Q |
103 |
ttaaaggttcttacgacactagttaatgttttgtattgacagtgcagaatcatgcatcacttatttaacaagtatccattctctaacatcaaaacaagca |
202 |
Q |
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| T |
42677479 |
ttaaaggttcctacgacaccagttaatgttttgaattgacagtgcagaatcatgcatcacttatttaacaagtatccattctctaacatcaaaacatgta |
42677380 |
T |
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| Q |
203 |
acac-aaaaccctatcacagtaaagaagggaggataaataaaatatgctttcagaaaatcattaccaaatttaaagaaagaaatagtcataaatttaaga |
301 |
Q |
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| T |
42677379 |
acacaaaaaccctttctcagtaaagaagggaagataaataaaatatactttcagaaaatca----------taaagaaa-aaat-ctgataaatttaaga |
42677292 |
T |
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| Q |
302 |
agtaaaaatacccagaagcaaagcgacactatcacaagaaattcagaattt |
352 |
Q |
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| T |
42677291 |
agtaaaaatacctagaagcaaagagatactatgacatgaaactcagaattt |
42677241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 218 - 409
Target Start/End: Complemental strand, 42678047 - 42677856
Alignment:
| Q |
218 |
acagtaaagaagggaggataaataaaatatgctttcagaaaatcattaccaaatttaaagaaagaaatagtcataaatttaagaagtaaaaatacccaga |
317 |
Q |
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| T |
42678047 |
acagtaaagaagggaggataaataaaatatgctttcagaaaatcattaccaaatttaaagaaagaaatagtcataaatttaagaagtaaaaatacccaga |
42677948 |
T |
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| Q |
318 |
agcaaagcgacactatcacaagaaattcagaatttatttaacaagtatatccattctagcaacataaaaacacttccagagtaaagaaggga |
409 |
Q |
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| T |
42677947 |
agtaaagagacactatcacaagaaattcagaatttatttaacaagtatatccattctagcaacataaaaacacttccagagtaaagaaggga |
42677856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 500 - 558
Target Start/End: Complemental strand, 42677755 - 42677697
Alignment:
| Q |
500 |
tcacatgaaactcaaaatttgttcttatagcctctgacattctcaaacttactttgatc |
558 |
Q |
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| T |
42677755 |
tcacatgaaactcaaaatttgttcttatagcctctgacattctcaaacttactttgatc |
42677697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 352
Target Start/End: Complemental strand, 42677868 - 42677736
Alignment:
| Q |
220 |
agtaaagaagggaggataaataaaatatgctttcagaaaatcattaccaaatttaaagaaag-aaatagtcataaatttaagaagtaaaaatacccagaa |
318 |
Q |
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|||||||||||||||| |||||||||| ||||| ||||||||||| |||| ||||||||| ||| |||| | ||||||| ||||||||||||| |||| |
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| T |
42677868 |
agtaaagaagggaggagtaataaaatatactttctgaaaatcattatcaaacgtaaagaaagaaaaaagtc-tgaatttaataagtaaaaatacctagaa |
42677770 |
T |
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| Q |
319 |
gcaaagcgacactatcacaagaaattcagaattt |
352 |
Q |
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| T |
42677769 |
acaaaaagataatatcacatgaaactcaaaattt |
42677736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 547
Target Start/End: Original strand, 54704911 - 54704951
Alignment:
| Q |
507 |
aaactcaaaatttgttcttatagcctctgacattctcaaac |
547 |
Q |
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| T |
54704911 |
aaactcagaatttgttcctatagcctctgaccttctcaaac |
54704951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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