View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14133_low_2 (Length: 363)
Name: NF14133_low_2
Description: NF14133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14133_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 6827204 - 6827546
Alignment:
| Q |
13 |
cagacgccaaaattctatcttgacagaattcctacaaataattgtaacatgagaaaatgaattcaatacctgatatttaacatacttaggacaacatgtt |
112 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6827204 |
cagacgccagaattctatcttgacagaattcctacaaataatggtaacatgagaaaatgaattcaatacctgatatttaacatacttaggacaaaatgtt |
6827303 |
T |
|
| Q |
113 |
aggtacctggagaattcccttggttgtgaaagtcaaatccagttgaaagatgtccactgccatcaatccatttgattattagttgcctatggctatctgc |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6827304 |
aggtacctggagaattcccttggttgtg-aagtcaaatccagttgaaagatgtccactgccatcaatccatttgattattcgttgcctatggctatctgc |
6827402 |
T |
|
| Q |
213 |
-aaaagtaaaaaataagtgagct---------atgcaaaagaagtaatgagagggtaatgtattcacatacttagtaaccaaaaagtattcatttatttc |
302 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6827403 |
aaaaagtaaaaaataagtgagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcatttatttc |
6827502 |
T |
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| Q |
303 |
atgaatgagaattttaagcataccttggttatagtccaaagtag |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6827503 |
atgaatgagaattttaagcataccttggttatagtccaaagtag |
6827546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 9822940 - 9822598
Alignment:
| Q |
13 |
cagacgccaaaattctatcttgacagaattcctacaaataattgtaacatgagaaaatgaattcaatacctgatatttaacatacttaggacaacatgtt |
112 |
Q |
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| T |
9822940 |
cagacgccataattctatcttgacagaattcctacaaataatggtaacatgagaaaatgaattcaatacctgatatttaacatacttaggacaaaatgtt |
9822841 |
T |
|
| Q |
113 |
aggtacctggagaattcccttggttgtgaaagtcaaatccagttgaaagatgtccactgccatcaatccatttgattattagttgcctatggctatctgc |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9822840 |
aggtacctggagaattcccttggttgtg-aagtcaaatccagttgaaagatgtccactgccatcaatccatttgattattcgttgcctatggctatctgc |
9822742 |
T |
|
| Q |
213 |
-aaaagtaaaaaataagtgagct---------atgcaaaagaagtaatgagagggtaatgtattcacatacttagtaaccaaaaagtattcatttatttc |
302 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9822741 |
aaaaagtaaaaaataagtgagctaagtgtacaatgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcatttatttc |
9822642 |
T |
|
| Q |
303 |
atgaatgagaattttaagcataccttggttatagtccaaagtag |
346 |
Q |
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| T |
9822641 |
atgaatgagaattttaagcataccttggttatagtccaaagtag |
9822598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 87 - 346
Target Start/End: Complemental strand, 8458062 - 8457791
Alignment:
| Q |
87 |
atttaacatacttaggacaacatgttaggtacctggagaattcccttggttgtgaaagtcaaatccagttgaaagatgtccactgccatcaatccatttg |
186 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||| |||||||||| |||||| ||||||||||||| ||| |
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| T |
8458062 |
atttaacatacttaggacaaaatgttgggtacctggagaattcccttcgttgtgaa-gtcaaatgcagttgaaagctgtccagtgccatcaatccaattg |
8457964 |
T |
|
| Q |
187 |
attattagttgcctatggctatctgcaaa-agtaaaaaataagtgagct---------atgcaaaagaagtaatgagagggtaatgtattcacatactta |
276 |
Q |
| |
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|||||| |||| |||||| |||||||||| ||||||||||||| ||||| ||| ||||||| || ||| ||| |||||||||| ||||||| |
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| T |
8457963 |
attattcgttgtctatggttatctgcaaagagtaaaaaataagagagctgagtgtaaaatgaaaaagaaatattgaaaggccaatgtattcatatactta |
8457864 |
T |
|
| Q |
277 |
gtaaccaaaaagtattcatttatttcatgaatgagaattttaagc---ataccttggttatagtccaaagtag |
346 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
8457863 |
gtaaccaaaaagtattcatttatttgatgaattagaattttaagcagtataccttggttatagtccaaagtag |
8457791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 8458238 - 8458164
Alignment:
| Q |
13 |
cagacgccaaaattctatcttgacagaattcctacaaataattgtaacatgagaaaatgaattcaatacctgatat |
88 |
Q |
| |
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| T |
8458238 |
cagacgccaaaattctctcttgacagc-ttcctacaaataatggtaacatgaaaaaatgaattcaatacctgatat |
8458164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 27964079 - 27964189
Alignment:
| Q |
235 |
atgcaaaagaagtaatgagagggtaatgtattcacatacttagtaaccaaaaagtattcatttatttcatgaatgagaattttaagcataccttggttat |
334 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27964079 |
atgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcattta-ttcatgaatgagaattttaagcataccttggttat |
27964177 |
T |
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| Q |
335 |
agtccaaagtag |
346 |
Q |
| |
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|||||||||||| |
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| T |
27964178 |
agtccaaagtag |
27964189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 27964018 - 27964048
Alignment:
| Q |
13 |
cagacgccaaaattctatcttgacagaattc |
43 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27964018 |
cagacgccaaaattctatcttgacagaattc |
27964048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 25802634 - 25802704
Alignment:
| Q |
13 |
cagacgccaaaattctatcttgacagaattcctacaaataattgtaacatgagaaaatgaattcaatacct |
83 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25802634 |
cagacgccaaaattctatcttgacagaattcctacaaataatggtaacatgagaaaatgaattcaatacct |
25802704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 18361200 - 18361345
Alignment:
| Q |
13 |
cagacgccaaaattctatcttgacagaattcctacaaataattgtaacatgagaaaatgaattcaatacctgatatttaacatacttaggacaacatgtt |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||| | |
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| T |
18361200 |
cagacgccaaaattctatcttgacatgattcctacaaataatggtaacatgagaaaatgaattc----------gtttaacatacttaagacaaaatgct |
18361289 |
T |
|
| Q |
113 |
aggtacctggaga--attcccttggttgtgaaagtcaaatccagttgaaagatgtcc |
167 |
Q |
| |
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|||||||||||| |||||||||| |||| |||||| || |||||||||| ||||| |
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|
| T |
18361290 |
gggtacctggagatcattcccttggctgtg-aagtcatatgcagttgaaagttgtcc |
18361345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 18361361 - 18361424
Alignment:
| Q |
238 |
caaaagaagtaatgagagggtaatgtattcacatacttagtaaccaaaaagtattcatttattt |
301 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
18361361 |
caaaagaagtattgaaagggtaatgtattcacatgcttagtaaccaaaaagtattcatttattt |
18361424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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