View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14134_high_4 (Length: 227)

Name: NF14134_high_4
Description: NF14134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14134_high_4
NF14134_high_4
[»] chr5 (6 HSPs)
chr5 (23-222)||(15063659-15063858)
chr5 (38-182)||(7100706-7100851)
chr5 (38-182)||(12021969-12022114)
chr5 (38-182)||(16797349-16797494)
chr5 (38-182)||(40368580-40368725)
chr5 (38-182)||(37680716-37680861)
[»] chr8 (9 HSPs)
chr8 (31-213)||(17783472-17783655)
chr8 (38-182)||(199016-199161)
chr8 (38-182)||(313853-313998)
chr8 (38-182)||(30407135-30407280)
chr8 (38-182)||(43808815-43808960)
chr8 (38-152)||(41948518-41948633)
chr8 (83-182)||(1290005-1290105)
chr8 (23-146)||(31474473-31474597)
chr8 (78-182)||(27437620-27437725)
[»] scaffold0044 (1 HSPs)
scaffold0044 (38-182)||(46197-46342)
[»] chr7 (3 HSPs)
chr7 (38-182)||(7941415-7941560)
chr7 (38-182)||(27760077-27760222)
chr7 (38-147)||(13829437-13829547)
[»] chr6 (5 HSPs)
chr6 (38-182)||(8316836-8316981)
chr6 (35-182)||(27569512-27569660)
chr6 (35-182)||(17162776-17162924)
chr6 (35-182)||(17887958-17888106)
chr6 (33-74)||(15566228-15566269)
[»] chr4 (3 HSPs)
chr4 (38-182)||(44150238-44150383)
chr4 (35-182)||(50629260-50629408)
chr4 (38-182)||(31357841-31357986)
[»] chr3 (3 HSPs)
chr3 (38-182)||(54168676-54168821)
chr3 (38-182)||(53355535-53355680)
chr3 (84-185)||(43552969-43553071)
[»] chr2 (3 HSPs)
chr2 (38-182)||(8054072-8054217)
chr2 (38-182)||(36673731-36673876)
chr2 (38-182)||(35951770-35951915)
[»] chr1 (3 HSPs)
chr1 (38-182)||(26314693-26314838)
chr1 (38-182)||(43593043-43593188)
chr1 (23-60)||(30646172-30646209)
[»] scaffold0440 (1 HSPs)
scaffold0440 (35-182)||(6186-6334)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 15063659 - 15063858
Alignment:
Q  23 ttgaagcatggaggttgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacatggccagtttcttccaca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15063659 ttgaagcatggaggttgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacatggccagtttcttccaca 15063758  T
Q  123 agctatgccaactatcaatctcacagtttctagtctagctacaggtgcatacacttcaaaatagtcaaggccaattttctccataaagccctttgatact 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||| ||||    
T  15063759 agctatgccaactatcaatctcacagtttctagtctagctacaggtgcataaacttcaaaatagtcaaggccaactttctccataaagccccttgctact 15063858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 7100706 - 7100851
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  7100706 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 7100805  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  7100806 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 7100851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 12022114 - 12021969
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  12022114 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 12022015  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  12022014 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 12021969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 16797494 - 16797349
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  16797494 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 16797395  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  16797394 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 16797349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 40368580 - 40368725
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  40368580 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctataacaacta 40368679  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  40368680 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 40368725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 37680861 - 37680716
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  |||||  |||||||||| || |||| ||| |||||||| ||||||||||||||  ||||||    
T  37680861 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcatattttacatccaaatgatgcattggccagttccttccacaagctatagcaacta 37680762  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||| ||||||||||| | |||||| || || ||||| ||||||||    
T  37680761 tcaacctcacagtttccaatctagcaactggagcatatacttcaaa 37680716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 213
Target Start/End: Original strand, 17783472 - 17783655
Alignment:
Q  31 tggaggttgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatg 129  Q
    |||||||||||| || || |||| |||||||| | ||| |||||||||||   ||||||||||||| || ||||| ||| |||||||||||||||||||     
T  17783472 tggaggttgtgttacgtatacaatttcatctagttgaccatttaagaaagaacattttacatctaaatggtacataggcaagtttcttccacaagctata 17783571  T
Q  130 ccaactatcaatctcacagtttctagtctagctacaggtgcatacacttcaaaatagtcaaggccaattttctccataaagccc 213  Q
      | ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||||||| ||||| ||||||||||    
T  17783572 gtagctatcaatctcacagtttctagtctagctactggtgcttacacttcaaagtagccaaggccaactttctgcataaagccc 17783655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 199016 - 199161
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  199016 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 199115  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  199116 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 199161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 313853 - 313998
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  313853 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 313952  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  313953 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 313998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 30407135 - 30407280
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  30407135 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 30407234  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  30407235 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 30407280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 43808815 - 43808960
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  43808815 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 43808914  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  43808915 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 43808960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 41948633 - 41948518
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||| ||||||||||||||  ||||||    
T  41948633 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagttccttccacaagctatatcaacta 41948534  T
Q  137 tcaatctcacagtttc 152  Q
    ||||||||||||||||    
T  41948533 tcaatctcacagtttc 41948518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 1290105 - 1290005
Alignment:
Q  83 gattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaactatcaatctcacagtttctagtctagctacaggtgcatacacttcaa 181  Q
    ||||||||||| || |||| ||| |||||||| ||||||||||||||  |||||||||||||||||||||| | |||||| || || ||||| |||||||    
T  1290105 gattttacatccaaatgatgcattggccagttccttccacaagctatagcaactatcaatctcacagtttccaatctagcaactggagcatatacttcaa 1290006  T
Q  182 a 182  Q
    |    
T  1290005 a 1290005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 31474473 - 31474597
Alignment:
Q  23 ttgaagcatggaggttgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccac 121  Q
    ||||| ||||| |||||||| ||||||||  ||||||||||  ||| |||||  ||| | ||||||||||| || |||||||| || | |||||||||||    
T  31474473 ttgaaacatggtggttgtgttacatacacttcttcatctaaaggaccatttagaaaaacagattttacatccaaatgatacattggtccgtttcttccac 31474572  T
Q  122 aagctatgccaactatcaatctcac 146  Q
    |||||||  ||||||||||||||||    
T  31474573 aagctattgcaactatcaatctcac 31474597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 27437620 - 27437725
Alignment:
Q  78 aagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaactatcaatctcacagtttctagtctagctacaggtgcatacac 176  Q
    |||| ||||||||||| |  |||||||| || |||||||||||| ||| |||  ||| ||||| ||||||||| |||| ||| ||||| || ||||| ||    
T  27437620 aagcagattttacatccagatgatacattggtcagtttcttccaaaagttatagcaattatcagtctcacagtctctaatcttgctactggagcatatac 27437719  T
Q  177 ttcaaa 182  Q
    ||||||    
T  27437720 ttcaaa 27437725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 46197 - 46342
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  46197 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 46296  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  46297 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 46342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 7941415 - 7941560
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  7941415 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 7941514  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  7941515 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 7941560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 27760222 - 27760077
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  27760222 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 27760123  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  27760122 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 27760077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 13829437 - 13829547
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||  |||||||||||||| |||| ||| ||  |||| |||||||||| |||  ||||||    
T  13829437 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagtagattttacatctaaatgatgcattggttagttccttccacaagttataacaacta 13829536  T
Q  137 tcaatctcaca 147  Q
    |||||||||||    
T  13829537 tcaatctcaca 13829547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 8316836 - 8316981
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  8316836 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 8316935  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  8316936 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 8316981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 182
Target Start/End: Original strand, 27569512 - 27569660
Alignment:
Q  35 ggttgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaa 133  Q
    |||||||| ||||||||  ||||||||||  ||| ||| |  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  |||    
T  27569512 ggttgtgtcacatacacttcttcatctaaaggaccattcagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaa 27569611  T
Q  134 ctatcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    ||||||||||||||||||| | |||||| || || ||||| ||||||||    
T  27569612 ctatcaatctcacagtttccaatctagcaactggagcatatacttcaaa 27569660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 17162924 - 17162776
Alignment:
Q  35 ggttgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaa 133  Q
    |||||||| ||||||||  ||||||||||  ||| |||||  ||||  ||||||||||| || |||| ||| |||||||| ||||||||||||||  |||    
T  17162924 ggttgtgtcacatacacttcttcatctaaaggaccatttagaaaagtagattttacatccaaatgatgcattggccagttccttccacaagctataacaa 17162825  T
Q  134 ctatcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||| ||||||| |||||||| ||||| || ||||| ||||||||    
T  17162824 ctatcaatatcacagtctctagtcttgctactggagcataaacttcaaa 17162776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 182
Target Start/End: Original strand, 17887958 - 17888106
Alignment:
Q  35 ggttgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaa 133  Q
    |||||||| ||||||||  |||||||| |  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||| ||||||||||||||  |||    
T  17887958 ggttgtgtcacatacacttcttcatctgaaggaccatttagaaaagcagattttacatccaaatgatgcataggccagttccttccacaagctatagcaa 17888057  T
Q  134 ctatcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||| |||||| | |||||| || || ||||| ||||||||    
T  17888058 ctatcaatctcatagtttccaatctagcaactggagcatatacttcaaa 17888106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 15566228 - 15566269
Alignment:
Q  33 gaggttgtgtaacatacacaacttcatctaatagacaattta 74  Q
    |||||||||| ||||||||||||||||||| ||||| |||||    
T  15566228 gaggttgtgtgacatacacaacttcatctagtagaccattta 15566269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 44150383 - 44150238
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  44150383 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 44150284  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  44150283 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 44150238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 182
Target Start/End: Original strand, 50629260 - 50629408
Alignment:
Q  35 ggttgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacatgg-ccagtttcttccacaagctatgccaa 133  Q
    |||||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| | ||| || ||||||||||||||  |||    
T  50629260 ggttgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattgaccaattccttccacaagctatagcaa 50629359  T
Q  134 ctatcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    ||||||||||||||||||| | |||||| || || ||||| ||||||||    
T  50629360 ctatcaatctcacagtttccaatctagcaactggagcatatacttcaaa 50629408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 31357986 - 31357841
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  |||||  |||||||||| || |||| ||| |||||||| ||||||||||||||  ||| ||    
T  31357986 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcaaattttacatccaaatgatgcattggccagttccttccacaagctatagcaatta 31357887  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    ||||||||||| |||| | |||||| || || ||||| ||||||||    
T  31357886 tcaatctcacaatttccaatctagcaactggagcatatacttcaaa 31357841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 54168676 - 54168821
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  54168676 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 54168775  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  54168776 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 54168821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 53355535 - 53355680
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacatgg-ccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  |||   ||||||||||| || |||| ||| | |||||||||||||||||||||  ||||||    
T  53355535 tgtgtcacatacacttcttcatctaaaggaccatttagaaaaaaagattttacatccaaatgatgcattgaccagtttcttccacaagctatagcaacta 53355634  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||| |||| ||| |||||||| ||||| || ||||| ||||||||    
T  53355635 tcaacctcatagtctctagtcttgctactggagcataaacttcaaa 53355680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 43553071 - 43552969
Alignment:
Q  84 attttacatctaagtgatacat-ggccagtttcttccacaagctatgccaactatcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||| || |||| ||| |||| ||| ||||||||||||||  |||||||||||||||||||||| | ||||||  | || ||||| ||||||||    
T  43553071 attttacatccaaatgatgcattggccggttccttccacaagctatagcaactatcaatctcacagtttccaatctagcatctggagcatatacttcaaa 43552972  T
Q  183 ata 185  Q
    |||    
T  43552971 ata 43552969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 8054217 - 8054072
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  8054217 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 8054118  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  8054117 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 8054072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 36673876 - 36673731
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  36673876 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 36673777  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  36673776 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 36673731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 35951770 - 35951915
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||| ||||||||||||||  ||||||    
T  35951770 tgtgtcacatacacttcttcatctaaatgaccatttagaaaagcagattttacatccaaatgatgcattggccagttccttccacaagctataacaacta 35951869  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  35951870 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 35951915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 26314838 - 26314693
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||||||||||||||||||  ||||||    
T  26314838 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagtttcttccacaagctatagcaacta 26314739  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| || || ||||| ||||||||    
T  26314738 tcaatctcacagtttccaatctagcaactggagcatatacttcaaa 26314693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 43593043 - 43593188
Alignment:
Q  38 tgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaacta 136  Q
    ||||| ||||||||  ||||||||||  ||| |||||  |||||  |||||||||| || |||| ||| |||||||| ||||||||||||||  ||||||    
T  43593043 tgtgtcacatacacttcttcatctaaaggaccatttagaaaagcatattttacatccaaatgatgcattggccagttccttccacaagctatagcaacta 43593142  T
Q  137 tcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||||||||||||||| | |||||| ||  | ||||| ||||||||    
T  43593143 tcaatctcacagtttccaatctagcaactagagcatatacttcaaa 43593188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 30646209 - 30646172
Alignment:
Q  23 ttgaagcatggaggttgtgtaacatacacaacttcatc 60  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  30646209 ttgaagcctggaggttgtgtaacataaacaacttcatc 30646172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 6334 - 6186
Alignment:
Q  35 ggttgtgtaacatacacaacttcatctaatagacaatttaagaaagctgattttacatctaagtgatacat-ggccagtttcttccacaagctatgccaa 133  Q
    |||||||| ||||||||  ||||||||||  ||| |||||  ||||| ||||||||||| || |||| ||| |||||||| || |||||||||||  |||    
T  6334 ggttgtgtcacatacacttcttcatctaaaggaccatttagaaaagcagattttacatccaaatgatgcattggccagttcctaccacaagctatagcaa 6235  T
Q  134 ctatcaatctcacagtttctagtctagctacaggtgcatacacttcaaa 182  Q
    |||| |||||||||||||| | |||||| || || ||||| ||||||||    
T  6234 ctattaatctcacagtttccaatctagcaactggagcatatacttcaaa 6186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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