View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14134_low_2 (Length: 510)

Name: NF14134_low_2
Description: NF14134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14134_low_2
NF14134_low_2
[»] chr5 (13 HSPs)
chr5 (1-273)||(40676100-40676372)
chr5 (270-497)||(40676401-40676628)
chr5 (383-477)||(30680848-30680942)
chr5 (383-477)||(30716988-30717082)
chr5 (383-477)||(30746030-30746124)
chr5 (391-477)||(30432424-30432510)
chr5 (383-455)||(37345031-37345103)
chr5 (386-477)||(30340335-30340425)
chr5 (404-460)||(29582197-29582253)
chr5 (386-474)||(30479875-30479962)
chr5 (357-443)||(29850457-29850542)
chr5 (345-451)||(17979940-17980047)
chr5 (404-460)||(29611966-29612022)
[»] chr3 (2 HSPs)
chr3 (383-476)||(41486173-41486264)
chr3 (344-477)||(23215984-23216117)
[»] chr6 (1 HSPs)
chr6 (345-477)||(11075751-11075883)
[»] chr1 (1 HSPs)
chr1 (383-464)||(7585462-7585542)
[»] chr2 (1 HSPs)
chr2 (16-55)||(21089559-21089598)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 40676100 - 40676372
Alignment:
Q  1 caaccttccagatctttattttgataacatagaataaccaacagaacttgccttaatttaaatttcagattatgattgcagttttgatatccagtttaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40676100 caaccttccagatctttattttgataacatagaataaccaacagaacttgccttaatttaaatttcagattatgattgcagttttgatatccagtttaac 40676199  T
Q  101 aataatggatgaattgtactgaaatgaatttctttagccattgtcaatatttacctaaaaaatcactaaatcttatgaataaacattgaaatgattgnnn 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       
T  40676200 aataatggatgaattgtactgaaatgaatttctttagccattgtcaatatttgcctaaaaaatcactaaatcttatgaataaacattgaaatgattgttt 40676299  T
Q  201 nnnnnctaatttgtttcactgaccacctcatcggtacatgttatagaaaaacaagcttagtttgctttcttct 273  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40676300 tttttctaatttgtttcactgaccacctcatcggtacatgttatagaaaaacaagcttagtttgctttcttct 40676372  T

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Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 270 - 497
Target Start/End: Original strand, 40676401 - 40676628
Alignment:
Q  270 ttctcagatgttgttacatgttatttattcccccggacctttaatataagcaaaatttctaattagaaactcgttttaaaatattcaaatgccaaaacaa 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  40676401 ttctcagatgttgttacatgttatttattcccccggacctttaatataagcaaaatttctaattagaaacgcgtgttaaaatattcaaatgccaaaacaa 40676500  T
Q  370 ttgaaagagaaactcactaagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatcagttaaaggaaattcaaaacttccgaag 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40676501 ttgaaagagaaactcactaagatatgaacttttgcttaccttgaaactaactataaccagaaaagatatatcagttaaaggaaattcaaaacttccgaag 40676600  T
Q  470 caaacttccacctaaaaggctaaaactg 497  Q
    ||||||||||||||||||||||||||||    
T  40676601 caaacttccacctaaaaggctaaaactg 40676628  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 383 - 477
Target Start/End: Complemental strand, 30680942 - 30680848
Alignment:
Q  383 tcactaagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatcagttaaaggaaattcaaaacttccgaagcaaacttc 477  Q
    ||||||||||||||||| |  |||||||||||| |||| |||||||| ||||| ||||||||||||||||||| ||| |||| | ||||||||||    
T  30680942 tcactaagatatgaactatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgaaatcttcagcagcaaacttc 30680848  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 383 - 477
Target Start/End: Complemental strand, 30717082 - 30716988
Alignment:
Q  383 tcactaagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatcagttaaaggaaattcaaaacttccgaagcaaacttc 477  Q
    ||||||||||||||||| |  |||||||||||| |||| |||||||| ||||| ||||||||||||||||||| ||| |||| | ||||||||||    
T  30717082 tcactaagatatgaactatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgaaatcttcagcagcaaacttc 30716988  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 383 - 477
Target Start/End: Original strand, 30746030 - 30746124
Alignment:
Q  383 tcactaagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatcagttaaaggaaattcaaaacttccgaagcaaacttc 477  Q
    ||||||||||||||||| |  |||||||||||| |||| |||||||| ||||| ||||||||||||||||||| | | |||| | ||||||||||    
T  30746030 tcactaagatatgaactatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgatatcttcagcagcaaacttc 30746124  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 477
Target Start/End: Original strand, 30432424 - 30432510
Alignment:
Q  391 atatgaacttttgcttaccttgaaactaactataaccagaaaagatctatcagttaaaggaaattcaaaacttccgaagcaaacttc 477  Q
    ||||||||| |  |||||||||||| |||| |||||||| ||||| ||||||||||||||||||| ||| |||| | ||||||||||    
T  30432424 atatgaactatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgaaatcttcagcagcaaacttc 30432510  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 383 - 455
Target Start/End: Original strand, 37345031 - 37345103
Alignment:
Q  383 tcactaagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatcagttaaaggaaatt 455  Q
    ||||||||||||||||| |  |||||||||||| |||| ||||| || ||||| |||||||||||||||||||    
T  37345031 tcactaagatatgaactatgccttaccttgaaattaaccataacaagcaaagaactatcagttaaaggaaatt 37345103  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 477
Target Start/End: Complemental strand, 30340425 - 30340335
Alignment:
Q  386 ctaagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatcagttaaaggaaattcaaaacttccgaagcaaacttc 477  Q
    |||||||||||||| | | |||||| ||||| ||| |||||||| |||||  |||||||||||||||||| ||| |||| | ||||||||||    
T  30340425 ctaagatatgaactat-gtttacctggaaaccaacgataaccagcaaagagatatcagttaaaggaaattgaaatcttcagcagcaaacttc 30340335  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 460
Target Start/End: Original strand, 29582197 - 29582253
Alignment:
Q  404 cttaccttgaaactaactataaccagaaaagatctatcagttaaaggaaattcaaaa 460  Q
    ||||||||| ||| ||| ||| |||| |||||||| |||||||||||||||||||||    
T  29582197 cttaccttgcaaccaacaatatccagcaaagatctgtcagttaaaggaaattcaaaa 29582253  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 30479875 - 30479962
Alignment:
Q  386 ctaagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatcagttaaaggaaattcaaaacttccgaagcaaac 474  Q
    |||||||||||||| | | |||||| ||||| ||| |||||||| |||||  |||||||||||||||||| ||| |||| | |||||||    
T  30479875 ctaagatatgaactat-gtttacctggaaaccaacgataaccagtaaagagatatcagttaaaggaaattgaaatcttcagcagcaaac 30479962  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 29850457 - 29850542
Alignment:
Q  357 aatgccaaaacaattgaaagagaaactcactaagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatcag 443  Q
    |||||| || || ||||||||||||  ||||||||| ||||| ||||||||||||||||  |||| ||||  | |||||||||||||    
T  29850457 aatgcctaagcacttgaaagagaaatccactaagatctgaac-tttgcttaccttgaaaacaactctaactggcaaagatctatcag 29850542  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 451
Target Start/End: Original strand, 17979940 - 17980047
Alignment:
Q  345 ttaaaatattcaaatgccaaaacaattg--aaagagaaactcactaagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatca 442  Q
    |||||||||||||||||  || || |||  || || ||| |||||||||| |||||||| |||||||||||||| |||| ||||||| || ||| ||||     
T  17979940 ttaaaatattcaaatgcttaagcacttgtgaaggataaaatcactaagatttgaacttt-gcttaccttgaaaccaactttaaccagcaacgatttatcc 17980038  T
Q  443 gttaaagga 451  Q
    |||| ||||    
T  17980039 gttatagga 17980047  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 460
Target Start/End: Complemental strand, 29612022 - 29611966
Alignment:
Q  404 cttaccttgaaactaactataaccagaaaagatctatcagttaaaggaaattcaaaa 460  Q
    ||||||||| ||| |||  || |||| |||||||| |||||||||||||||||||||    
T  29612022 cttaccttgcaaccaacagtatccagcaaagatctgtcagttaaaggaaattcaaaa 29611966  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 476
Target Start/End: Complemental strand, 41486264 - 41486173
Alignment:
Q  383 tcactaagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatcagttaaag-gaaattcaaaacttccgaagcaaactt 476  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||   ||||| |||||  |||||||||||||| ||| |||||||    
T  41486264 tcactaagatatgaacttt-gcttaccttgaaaccaactataaccaaaaaaga--aatcagctaaagtaaaattcaaaacttcagaatcaaactt 41486173  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 344 - 477
Target Start/End: Original strand, 23215984 - 23216117
Alignment:
Q  344 tttaaaatattcaaatgccaaaacaattgaaagagaaactcact-aagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatca 442  Q
    ||||||||||||||||||  ||  | |||||||| ||| ||||| ||||| ||||||||  ||||||||||||| | || ||||||| || ||| ||| |    
T  23215984 tttaaaatattcaaatgcttaagtagttgaaagataaaatcacttaagatttgaactttc-cttaccttgaaaccagctttaaccagcaatgatttatta 23216082  T
Q  443 gttaaaggaaattcaaaacttccgaagcaaacttc 477  Q
    ||||||||||||| | |||||| | ||||||||||    
T  23216083 gttaaaggaaattgataacttcagcagcaaacttc 23216117  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 477
Target Start/End: Complemental strand, 11075883 - 11075751
Alignment:
Q  345 ttaaaatattcaaatgccaaaacaattgaaagagaaactcact-aagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatcag 443  Q
    |||||||||||||||||  ||  | |||||||| ||| ||||| ||||| ||||||||  ||||||||||||| | || ||||||| || ||| ||| ||    
T  11075883 ttaaaatattcaaatgcttaagtagttgaaagataaaatcacttaagatttgaactttc-cttaccttgaaaccagctttaaccagcaatgatttattag 11075785  T
Q  444 ttaaaggaaattcaaaacttccgaagcaaacttc 477  Q
    |||||||||||| | |||||| | ||||||||||    
T  11075784 ttaaaggaaattgataacttcagcagcaaacttc 11075751  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 464
Target Start/End: Complemental strand, 7585542 - 7585462
Alignment:
Q  383 tcactaagatatgaacttttgcttaccttgaaactaactataaccagaaaagatctatcagttaaaggaaattcaaaacttc 464  Q
    |||||||||| |||||||| |||||||||||||| ||||||||| ||||||| | ||||||  |||||||| | ||||||||    
T  7585542 tcactaagatttgaacttt-gcttaccttgaaaccaactataactagaaaaggtgtatcagccaaaggaaactgaaaacttc 7585462  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 21089559 - 21089598
Alignment:
Q  16 ttattttgataacatagaataaccaacagaacttgcctta 55  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  21089559 ttattttgataacatagaataaacaacagagcttgcctta 21089598  T

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