View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14134_low_3 (Length: 485)

Name: NF14134_low_3
Description: NF14134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14134_low_3
NF14134_low_3
[»] chr3 (13 HSPs)
chr3 (12-232)||(1602208-1602428)
chr3 (10-124)||(1622660-1622774)
chr3 (106-232)||(1618469-1618595)
chr3 (406-468)||(1622788-1622850)
chr3 (317-443)||(1618279-1618405)
chr3 (254-292)||(29809298-29809336)
chr3 (254-292)||(52362628-52362666)
chr3 (254-295)||(54694917-54694959)
chr3 (254-292)||(37065954-37065993)
chr3 (254-295)||(261190-261232)
chr3 (265-295)||(35835416-35835446)
chr3 (265-295)||(35892133-35892163)
chr3 (254-295)||(263519-263560)
[»] scaffold0548 (1 HSPs)
scaffold0548 (254-295)||(6876-6917)
[»] chr8 (6 HSPs)
chr8 (254-295)||(42269355-42269396)
chr8 (254-295)||(19971305-19971346)
chr8 (254-295)||(21021463-21021504)
chr8 (265-295)||(19970551-19970581)
chr8 (265-295)||(21022228-21022258)
chr8 (254-295)||(32179037-32179079)
[»] chr5 (5 HSPs)
chr5 (254-295)||(27100402-27100443)
chr5 (254-292)||(8469835-8469873)
chr5 (254-292)||(23237029-23237067)
chr5 (254-292)||(41609039-41609077)
chr5 (266-295)||(27099540-27099569)
[»] chr4 (4 HSPs)
chr4 (254-295)||(11311485-11311526)
chr4 (254-292)||(38941079-38941117)
chr4 (254-295)||(43416575-43416616)
chr4 (252-295)||(43417220-43417264)
[»] chr7 (3 HSPs)
chr7 (165-225)||(29545028-29545088)
chr7 (254-292)||(20008228-20008266)
chr7 (256-292)||(27168489-27168525)
[»] chr1 (8 HSPs)
chr1 (256-292)||(19172631-19172667)
chr1 (255-295)||(39772004-39772045)
chr1 (254-292)||(17238501-17238540)
chr1 (254-295)||(1614937-1614979)
chr1 (254-292)||(17237693-17237731)
chr1 (254-292)||(34736606-34736644)
chr1 (254-295)||(16386344-16386385)
chr1 (267-295)||(28313841-28313869)
[»] scaffold0008 (2 HSPs)
scaffold0008 (254-292)||(256826-256864)
scaffold0008 (254-292)||(257621-257659)
[»] chr2 (5 HSPs)
chr2 (254-292)||(41319997-41320035)
chr2 (254-295)||(15555064-15555105)
chr2 (254-295)||(29156140-29156181)
chr2 (254-292)||(13544586-13544624)
chr2 (254-292)||(26234896-26234934)
[»] chr6 (3 HSPs)
chr6 (254-292)||(13220028-13220066)
chr6 (254-295)||(29414557-29414599)
chr6 (254-295)||(29413704-29413745)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 8e-93; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 1602208 - 1602428
Alignment:
Q  12 agagagagatatgttgaggaagaatatttaagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgatgtcgtgtgatattaagc 111  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1602208 agagagagatatgttgaggcagaatatttgagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgacgtcgtgtgatattaagc 1602307  T
Q  112 tggatgttgtgaattctacgcaaattcatctcttatgattttagcaatttttaatttattctcaattgatgtaatcaaccaatttgaatgaatgaatgtt 211  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||   || | ||||||||||||||||||||     
T  1602308 tggatgttgtgaattctacgcaaattcatctcttatggttttagcaatttttaatttgttctcgattgatgctgtctatcaatttgaatgaatgaatgtc 1602407  T
Q  212 gttgttttagtcaacaaaata 232  Q
    |||||||||||||||||||||    
T  1602408 gttgttttagtcaacaaaata 1602428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 1622660 - 1622774
Alignment:
Q  10 gcagagagagatatgttgaggaagaatatttaagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgatgtcgtgtgatattaa 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1622660 gcagagagagatatgttgaggaacaatatttaagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgatgtcgtgtgatattaa 1622759  T
Q  110 gctggatgttgtgaa 124  Q
    |||||||||||||||    
T  1622760 gctggatgttgtgaa 1622774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 1618595 - 1618469
Alignment:
Q  106 ttaagctggatgttgtgaattctacgcaaattcatctcttatgattttagcaatttttaatttattctcaattgatgtaatcaaccaatttgaatgaatg 205  Q
    |||| ||||||||||||| || | ||||||||||||||||||| ||||| ||||||||||||| || ||||| || | | || | |||||||||||| ||    
T  1618595 ttaacctggatgttgtgagttgttcgcaaattcatctcttatggttttaacaatttttaatttgttttcaatcgacgcagtctatcaatttgaatgagtg 1618496  T
Q  206 aatgttgttgttttagtcaacaaaata 232  Q
    ||||| |||||||||||||||||||||    
T  1618495 aatgtcgttgttttagtcaacaaaata 1618469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 406 - 468
Target Start/End: Original strand, 1622788 - 1622850
Alignment:
Q  406 ctactattagggtgctaaaccttgctccccacttggtgctatttataattgaactaattactt 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1622788 ctactattagggtgctaaaccttgctccccacttggtgctatttataattgaactaattactt 1622850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 317 - 443
Target Start/End: Complemental strand, 1618405 - 1618279
Alignment:
Q  317 tacataattttgttgtagtatttggattgttactttgcaaaggaaataatctatttataatgactgaaactcaatcgatcgattggtcactactattagg 416  Q
    ||||| ||||||  ||||||||| || ||||||||||| |||  || ||||||| |||||||| |||| ||||||| ||||||||||||||  |||||||    
T  1618405 tacatgattttgaagtagtatttagaatgttactttgccaagacaagaatctatgtataatgattgaatctcaatcaatcgattggtcactgatattagg 1618306  T
Q  417 gtgctaaaccttgctccccacttggtg 443  Q
     ||| ||||||||||||||||||||||    
T  1618305 ctgccaaaccttgctccccacttggtg 1618279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 29809336 - 29809298
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  29809336 atatatatatatggagggatattttgactccaagagtaa 29809298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 52362628 - 52362666
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  52362628 atatatatatgaggagggatattttgactccaagagtaa 52362666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 54694917 - 54694959
Alignment:
Q  254 atatatatata-aggagggatattttgactccaagagtaactc 295  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  54694917 atatatatatataggagggatattttgactccaagagtaactc 54694959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 37065954 - 37065993
Alignment:
Q  254 atatatatata-aggagggatattttgactccaagagtaa 292  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  37065954 atatatatatagaggagggatattttgactccaagagtaa 37065993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 261190 - 261232
Alignment:
Q  254 atatatatataagg-agggatattttgactccaagagtaactc 295  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  261190 atatatatataggggagggatattttgactccaagagtaactc 261232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 295
Target Start/End: Original strand, 35835416 - 35835446
Alignment:
Q  265 aggagggatattttgactccaagagtaactc 295  Q
    |||||||||||||||||||||||||||||||    
T  35835416 aggagggatattttgactccaagagtaactc 35835446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 295
Target Start/End: Original strand, 35892133 - 35892163
Alignment:
Q  265 aggagggatattttgactccaagagtaactc 295  Q
    |||||||||||||||||||||||||||||||    
T  35892133 aggagggatattttgactccaagagtaactc 35892163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 263519 - 263560
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaactc 295  Q
    ||||||||||  |||||||||| |||||||||||||||||||    
T  263519 atatatatatggggagggatatattgactccaagagtaactc 263560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 6876 - 6917
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaactc 295  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  6876 atatatatatgaggagggatattttgactccaagagtaactc 6917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 42269355 - 42269396
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaactc 295  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  42269355 atatatatatgaggagggatattttgactccaagagtaactc 42269396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 19971346 - 19971305
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaactc 295  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  19971346 atatatatatgaggaaggatattttgactccaagagtaactc 19971305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 21021463 - 21021504
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaactc 295  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  21021463 atatatatatgaggaaggatattttgactccaagagtaactc 21021504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 295
Target Start/End: Original strand, 19970551 - 19970581
Alignment:
Q  265 aggagggatattttgactccaagagtaactc 295  Q
    |||||||||||||||||||||||||||||||    
T  19970551 aggagggatattttgactccaagagtaactc 19970581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 295
Target Start/End: Complemental strand, 21022258 - 21022228
Alignment:
Q  265 aggagggatattttgactccaagagtaactc 295  Q
    |||||||||||||||||||||||||||||||    
T  21022258 aggagggatattttgactccaagagtaactc 21022228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 32179079 - 32179037
Alignment:
Q  254 atatatatataagga-gggatattttgactccaagagtaactc 295  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  32179079 atatatatatagggaagggatattttgactccaagagtaactc 32179037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 27100443 - 27100402
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaactc 295  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  27100443 atatatatatgaggagggatattttgactccaagagtaactc 27100402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 8469873 - 8469835
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  8469873 atatatatatgaggagggatattttgactccaagagtaa 8469835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 23237029 - 23237067
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  23237029 atatatatatgaggagggatatattgactccaagagtaa 23237067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 41609077 - 41609039
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  41609077 atatatatatgaggagggatattttgacttcaagagtaa 41609039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 27099540 - 27099569
Alignment:
Q  266 ggagggatattttgactccaagagtaactc 295  Q
    ||||||||||||||||||||||||||||||    
T  27099540 ggagggatattttgactccaagagtaactc 27099569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 11311526 - 11311485
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaactc 295  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  11311526 atatatatatgaggagggatattttgactccaagagtaactc 11311485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 38941079 - 38941117
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  38941079 atatatatataaggggtgatattttgactccaagagtaa 38941117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 43416575 - 43416616
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaactc 295  Q
    ||||||||||||| | |||||| |||||||||||||||||||    
T  43416575 atatatatataagaaaggatatattgactccaagagtaactc 43416616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 43417264 - 43417220
Alignment:
Q  252 taatatatatata-aggagggatattttgactccaagagtaactc 295  Q
    ||||||||||||| | ||||||||| |||||||||||||||||||    
T  43417264 taatatatatatagatgagggatatattgactccaagagtaactc 43417220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 29545028 - 29545088
Alignment:
Q  165 atttattctcaattgatgtaatcaaccaatttgaatgaatgaatgttgttgttttagtcaa 225  Q
    |||| ||||||||||||||| |  |||||||||||||||||||||| ||||| ||||||||    
T  29545028 atttgttctcaattgatgtagtttaccaatttgaatgaatgaatgtcgttgtgttagtcaa 29545088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 20008228 - 20008266
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  20008228 atatatatatgaggagggatatattgactccaagagtaa 20008266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 27168489 - 27168525
Alignment:
Q  256 atatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  27168489 atatatatgaggggggatattttgactccaagagtaa 27168525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 19172631 - 19172667
Alignment:
Q  256 atatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  19172631 atatatataaggagggatattttgactccaagagtaa 19172667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 39772004 - 39772045
Alignment:
Q  255 tatatatata-aggagggatattttgactccaagagtaactc 295  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  39772004 tatatatatagaggagggatattttgactccaagagtaactc 39772045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 17238540 - 17238501
Alignment:
Q  254 atatatatata-aggagggatattttgactccaagagtaa 292  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  17238540 atatatatatagaggagggatattttgactccaagagtaa 17238501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 1614979 - 1614937
Alignment:
Q  254 atatatatataagg-agggatattttgactccaagagtaactc 295  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  1614979 atatatatatatgggagggatattttgactccaagagtaactc 1614937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 17237693 - 17237731
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  17237693 atatatatatgaggagggatattttgactgcaagagtaa 17237731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 34736644 - 34736606
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  34736644 atatatatatagggagagatattttgactccaagagtaa 34736606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 16386385 - 16386344
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaactc 295  Q
    ||||||||||  |||||||||||||||||| |||||||||||    
T  16386385 atatatatatggggagggatattttgactctaagagtaactc 16386344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 28313841 - 28313869
Alignment:
Q  267 gagggatattttgactccaagagtaactc 295  Q
    |||||||||||||||||||||||||||||    
T  28313841 gagggatattttgactccaagagtaactc 28313869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 256826 - 256864
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  256826 atatatatatgaggagggatattttgactccaagagtaa 256864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 257659 - 257621
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  257659 atatatatatagggtgggatattttgactccaagagtaa 257621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 41319997 - 41320035
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  41319997 atatatatatgaggagggatattttgactccaagagtaa 41320035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 15555105 - 15555064
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaactc 295  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  15555105 atatatatatgaggagggatattttaactccaagagtaactc 15555064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 29156140 - 29156181
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaactc 295  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  29156140 atatatatatggggagggatattttgactccaagagtaactc 29156181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 13544586 - 13544624
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  13544586 atatatatatgaggagggatattttgacttcaagagtaa 13544624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 26234934 - 26234896
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  26234934 atatatatataaggagggatatattgacttcaagagtaa 26234896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 13220028 - 13220066
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaa 292  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  13220028 atatatatatgaggggggatattttgactccaagagtaa 13220066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 29414599 - 29414557
Alignment:
Q  254 atatatatataagg-agggatattttgactccaagagtaactc 295  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  29414599 atatatatatatgggagggatattttgactccaagagtaactc 29414557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 29413704 - 29413745
Alignment:
Q  254 atatatatataaggagggatattttgactccaagagtaactc 295  Q
    ||||||||||  |||||||||| |||||||||||||||||||    
T  29413704 atatatatatggggagggatatattgactccaagagtaactc 29413745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University