View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14134_low_4 (Length: 334)

Name: NF14134_low_4
Description: NF14134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14134_low_4
NF14134_low_4
[»] chr8 (6 HSPs)
chr8 (179-325)||(12587179-12587325)
chr8 (208-320)||(27323196-27323308)
chr8 (14-131)||(12587373-12587495)
chr8 (194-320)||(35036079-35036209)
chr8 (14-78)||(27324545-27324609)
chr8 (179-212)||(27324409-27324442)
[»] chr1 (2 HSPs)
chr1 (179-325)||(21880177-21880323)
chr1 (14-131)||(21880371-21880489)
[»] chr6 (2 HSPs)
chr6 (179-325)||(6901017-6901163)
chr6 (14-131)||(6900661-6900781)
[»] chr3 (2 HSPs)
chr3 (179-325)||(49602729-49602875)
chr3 (14-131)||(49602923-49603042)
[»] chr7 (2 HSPs)
chr7 (179-325)||(22970302-22970448)
chr7 (14-131)||(22970136-22970254)
[»] chr2 (1 HSPs)
chr2 (179-325)||(22329685-22329830)
[»] chr5 (2 HSPs)
chr5 (195-295)||(35360378-35360477)
chr5 (275-320)||(3497353-3497398)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 179 - 325
Target Start/End: Complemental strand, 12587325 - 12587179
Alignment:
Q  179 aatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattatt 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12587325 aatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgagattatt 12587226  T
Q  279 caacaatcttaaactttactactattttattgctttaagtgtctgtg 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12587225 caacaatcttaaactttactactattttattgctttaagtgtctgtg 12587179  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 27323308 - 27323196
Alignment:
Q  208 ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttactactatttta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||||| |||||| ||  |||||||    
T  27323308 ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgacaaatgattatttaggattattcaataatcttgaactttgctgttatttta 27323209  T
Q  308 ttgctttaagtgt 320  Q
    |||||||||||||    
T  27323208 ttgctttaagtgt 27323196  T

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Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 12587495 - 12587373
Alignment:
Q  14 catccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttctcattcc-----ttannnnnnnctctcttcctccattcatggtg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||        ||||||||||||||||||||||    
T  12587495 catccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttctcattcctttttttttttttttctctcttcctccattcatggtg 12587396  T
Q  109 atctaagaggtacactctcttcc 131  Q
    |||||||||||||||||||||||    
T  12587395 atctaagaggtacactctcttcc 12587373  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 194 - 320
Target Start/End: Original strand, 35036079 - 35036209
Alignment:
Q  194 ctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttga----taagtgattatttgggattattcaacaatctta 289  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |    |||||| || |||||||||||||||| ||| |     
T  35036079 ctattattactttgttgatattgaatttatgttgatagtgtaaactttattgttagggtttaataattaagtgtttttttgggattattcaacgatcatg 35036178  T
Q  290 aactttactactattttattgctttaagtgt 320  Q
    |||||| | ||||||||||| ||||||||||    
T  35036179 aactttgccactattttattcctttaagtgt 35036209  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 27324609 - 27324545
Alignment:
Q  14 catccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttctcattcctt 78  Q
    ||||||||||| |||| ||||||||||| || ||||| ||||||||||||||||||| |||||||    
T  27324609 catccttgtttcaaaacaaaacttcctcctctttgttacttgtgtctctaatcttcttattcctt 27324545  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 27324442 - 27324409
Alignment:
Q  179 aatgagagttaacatctattattaccttgttgat 212  Q
    |||||||||||||||||||||| |||||||||||    
T  27324442 aatgagagttaacatctattatcaccttgttgat 27324409  T

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Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 179 - 325
Target Start/End: Complemental strand, 21880323 - 21880177
Alignment:
Q  179 aatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattatt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21880323 aatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaaatttattgttagggtttgataagtgattatttgggattatt 21880224  T
Q  279 caacaatcttaaactttactactattttattgctttaagtgtctgtg 325  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  21880223 caacaatcttaaactttactactattttattgctttaagtgtttgtg 21880177  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 21880489 - 21880371
Alignment:
Q  14 catccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttctcattcctta-nnnnnnnctctcttcctccattcatggtgatct 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||  |||||||||    
T  21880489 catccttgttttaaaataaaacttcctcttccttgtttcttatgtctctaatcttctcattccttattttttttctctcttcctccattggtggtgatct 21880390  T
Q  113 aagaggtacactctcttcc 131  Q
    |||||||||||||||||||    
T  21880389 aagaggtacactctcttcc 21880371  T

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Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 179 - 325
Target Start/End: Original strand, 6901017 - 6901163
Alignment:
Q  179 aatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattatt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6901017 aatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttaggattatt 6901116  T
Q  279 caacaatcttaaactttactactattttattgctttaagtgtctgtg 325  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||    
T  6901117 caacaatattaaactttactactattttattgctttaagtgtttgtg 6901163  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 6900661 - 6900781
Alignment:
Q  14 catccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttctcattcctta---nnnnnnnctctcttcctccattcatggtgat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||  |||||||    
T  6900661 catccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttctcattccttattttttttttctctcttcctccattggtggtgat 6900760  T
Q  111 ctaagaggtacactctcttcc 131  Q
    ||||||||| |||||||||||    
T  6900761 ctaagaggtgcactctcttcc 6900781  T

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Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 179 - 325
Target Start/End: Complemental strand, 49602875 - 49602729
Alignment:
Q  179 aatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattatt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  49602875 aatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtacaaactttattgttagggtttgataagtgattatttgggattatt 49602776  T
Q  279 caacaatcttaaactttactactattttattgctttaagtgtctgtg 325  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  49602775 caacaatcttaaactctactactattttattgctttaagtgtttgtg 49602729  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 49603042 - 49602923
Alignment:
Q  14 catccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttctcattcctta--nnnnnnnctctcttcctccattcatggtgatc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||  ||||||||    
T  49603042 catccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttctcattccttatttttttttctctcttcctccattggtggtgatc 49602943  T
Q  112 taagaggtacactctcttcc 131  Q
    ||||||||||||||||||||    
T  49602942 taagaggtacactctcttcc 49602923  T

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Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 179 - 325
Target Start/End: Original strand, 22970302 - 22970448
Alignment:
Q  179 aatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattatt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||| |||||||    
T  22970302 aatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtaaaaaatttattgttagggtttgataagtgattatttgagattatt 22970401  T
Q  279 caacaatcttaaactttactactattttattgctttaagtgtctgtg 325  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  22970402 caacaatcttaaactttactactattttattgctttaagtgtatgtg 22970448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 22970136 - 22970254
Alignment:
Q  14 catccttgttttaaaataaaacttcctcttccttgtttcttgtgtctctaatcttctcattcctta-nnnnnnnctctcttcctccattcatggtgatct 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||  |||||||||    
T  22970136 catccttgttttaaaataaaacttcctcttccttgtttcttatgtctctaatcttctcattccttattttttttctctcttcctccattggtggtgatct 22970235  T
Q  113 aagaggtacactctcttcc 131  Q
    |||||||||||||||||||    
T  22970236 aagaggtacactctcttcc 22970254  T

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Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 179 - 325
Target Start/End: Complemental strand, 22329830 - 22329685
Alignment:
Q  179 aatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattatt 278  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22329830 aatgagagttaacatctattattaagttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattatt 22329731  T
Q  279 caacaatcttaaactttactactattttattgctttaagtgtctgtg 325  Q
      |||||||| || ||| || |||||||||| |||||||||| ||||    
T  22329730 -tacaatcttgaattttgctgctattttattactttaagtgtttgtg 22329685  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 35360477 - 35360378
Alignment:
Q  195 tattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactt 294  Q
    |||||||||||||  |||||| || || ||||||| |||  ||||||||||||||||||| || |||| |||||||| ||||||||||||| ||||||||    
T  35360477 tattattaccttgccgatattaaacttttgttgatagtgataactttattgttagggtttaat-agtgtttatttggaattattcaacaattttaaactt 35360379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 3497398 - 3497353
Alignment:
Q  275 tattcaacaatcttaaactttactactattttattgctttaagtgt 320  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||    
T  3497398 tattcaacaatcttgaactttacgactattttattgctttaagtgt 3497353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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