View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14134_low_5 (Length: 329)
Name: NF14134_low_5
Description: NF14134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14134_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 27790546 - 27790226
Alignment:
| Q |
1 |
cttttacattcttcatcaaccaatccgacatctcaacttgtgccgtgggcgaactctcgaccacaatctctatcttatacatctcaaaattcttgttcct |
100 |
Q |
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| T |
27790546 |
cttttacattcttcatcaaccaatccgacatctcaacttgtgttgtgggcgaaccctcgaccacagtctctatcttatacatctcaaaattcttgttcct |
27790447 |
T |
|
| Q |
101 |
tgtcggataattctttgaaaaccaatctgttccactacctccatctttttgtggcaaccctacgtcgatgaaaacccgacgagggtagctttcaagtgtg |
200 |
Q |
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| T |
27790446 |
tgtcggataattctttgaaaaccaatctgttccactacctccatctttttgtggcaaccctacgtcgatgaaaactcgacgagggtagctttcaagtgtg |
27790347 |
T |
|
| Q |
201 |
tcacccattaaatcaggtaaatactttgtacgcttcaaatacactcttgatttaccggaggcagcacgtggaggctcaaggagaacgtcctcaagtttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27790346 |
tcacccattaaatcaggtaaatactttgtacgcttcaaatacactcttgatttaccggaggcagcacgtggaggctcaaggagaacatcctcaagtttct |
27790247 |
T |
|
| Q |
301 |
gaagtgctgctctctttgcct |
321 |
Q |
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||||||||||||||||||||| |
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| T |
27790246 |
gaagtgctgctctctttgcct |
27790226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 46244992 - 46245167
Alignment:
| Q |
67 |
tctctatcttatacatctcaaaattcttgttccttgtcggataattctttgaaaaccaatctgttccactacctccatctttttgtggcaaccctacgtc |
166 |
Q |
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||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||| | || ||||||||||| |
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| T |
46244992 |
tctctatcttatacatctcgaaattcttgttcctagttggataattctttgaaaaccaatctgttccacttcctccttctttctccggtaaccctacgtc |
46245091 |
T |
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| Q |
167 |
gatgaaaacccgacgagggtagctttcaagtgtgtcacccattaaatcaggtaaatactttgtacgcttcaaatac |
242 |
Q |
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||||||||| || |||| ||| |||||||||| || ||||| ||||||||||||||| |||| |||||||||||| |
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| T |
46245092 |
gatgaaaacacggcgagtgtaactttcaagtgaatctcccatcaaatcaggtaaataccttgttcgcttcaaatac |
46245167 |
T |
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