View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14136_high_1 (Length: 569)
Name: NF14136_high_1
Description: NF14136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14136_high_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Original strand, 35910555 - 35911095
Alignment:
| Q |
18 |
aggaagacataggtgtctttggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35910555 |
aggaagacataggtgtctttggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattcta |
35910654 |
T |
|
| Q |
118 |
agaagagtacgttcgccactgcatatttcataatgatataagtttgtaagatattcatgtctcagaaatgcatcataagaaacaatgtaattatattgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35910655 |
agaagagtacgttcgccactgcatatttcataatgatataagttggtaagatattcatgtctcagaaatgcatcataagaaacaatgtaattatattgat |
35910754 |
T |
|
| Q |
218 |
gatgatgatgattgtttcaccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35910755 |
gatgatgatgattgtttcaccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggct |
35910854 |
T |
|
| Q |
318 |
ccataccccagtgaggaacagccaggtcctgtgagtttcaaacattatgttgtcagaatcaaagctgtcataatctcgactaagtaaacttgttgagctt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35910855 |
ccataccccagtgaggaacagccaggtcctgtgagtttcaaacattatgttgtcagaatcaaagctgtcataatctcgactaagtaaacttgttgagctt |
35910954 |
T |
|
| Q |
418 |
acatagactctcgactagtaaaactgagagcttacttatttgtttttatgactcatagttgtaagagtgtaagggttagcccttgagtttaacaaccatt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
35910955 |
acatagactctcgactagtaaaactgagagcttacttatttgtttttatgactcatagttgtaagagtgtaagggttagcccttgagtttaataaccatt |
35911054 |
T |
|
| Q |
518 |
gccagaataatttcatcaagagtaaagttcagatgatgatg |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35911055 |
gccagaataatttcatcaagagtaaagttcagatgatgatg |
35911095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 35940330 - 35940685
Alignment:
| Q |
17 |
aaggaagacataggtgtctttggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattct |
116 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
35940330 |
aaggaagacataggaatccttggcagttgatttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctattcctgctggagattcc |
35940429 |
T |
|
| Q |
117 |
aagaagagtacgttcgccactgcatatttcataatgatataagtttgtaagatattcatgtctcagaaatgcatcat-aagaaacaatgtaattatattg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
35940430 |
aagaagagtacgttcgccactgcatatttcataatgatataagtttgtaagatattcatgtctcagaaatgcatcataaagaaacaatgtaattatattg |
35940529 |
T |
|
| Q |
216 |
atgatgatgatgattgtttcaccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaagg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
35940530 |
atgatgatgatgattgtttcaccttcattccaagcatatgggttacggtatagtgtttttccatcagagttgactctgaagggtccgagctcctgaaagg |
35940629 |
T |
|
| Q |
316 |
ctccataccccagtgaggaacagccaggtcctgtgagtttcaaacattatgttgtc |
371 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
35940630 |
ctccatacccaagtgaagaacagccaggtcctgtgtggttcaaacattatgttgtc |
35940685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 36 - 387
Target Start/End: Original strand, 35927973 - 35928316
Alignment:
| Q |
36 |
ttggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgcca |
135 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| || || | |
|
|
| T |
35927973 |
ttggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaa |
35928072 |
T |
|
| Q |
136 |
ctgcatatttcataatgatataagtttgtaagatattcatgtctcagaa---atgcatcataagaaacaatgtaattatattgatgatgatgatgattgt |
232 |
Q |
| |
|
|||||||||||||||||||| | | ||||| ||||||||||| |||| ||||||||||||||||||| | ||| ||| |||| ||||| |
|
|
| T |
35928073 |
ctgcatatttcataatgataaac--tggtaagttattcatgtctaagaataaatgcatcataagaaacaatttcattctatcgatg---------attgt |
35928161 |
T |
|
| Q |
233 |
ttcaccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgag |
332 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35928162 |
ttcaccttcagtccaagcatattggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgag |
35928261 |
T |
|
| Q |
333 |
gaacagccaggtcctgtgagtttcaaacattatgttgtcagaatcaaagctgtca |
387 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35928262 |
gaacagccaggtcctgtaagtttcaaacattatgttgtcagaatcaaagctgtca |
35928316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 35921362 - 35921707
Alignment:
| Q |
18 |
aggaagacataggtgtctttggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattcta |
117 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
35921362 |
aggaagacataggcatctttagcagtggacttatctcctgaattgtcatagtccgatgatgtgtttgagtaggaaaatcctacccctgctggagattcca |
35921461 |
T |
|
| Q |
118 |
agaagagtacgttcgccactgcatatttcataatgatataagtttgtaagatattcatgtctcagaaatgcatcataagaaacaatgtaattatattgat |
217 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||| |||| || |||||| ||| |
|
|
| T |
35921462 |
agaagagtacatttgccactgcatatttcataaggagttaagtttctaagataatcatgtctcagaaatgcatcataaataacacattagttatatcgat |
35921561 |
T |
|
| Q |
218 |
gatgatgatgattgtttcaccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggct |
317 |
Q |
| |
|
||| | | |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
35921562 |
gatca---------tctcaccttcattccaagcatatgggttacggtataatgttttgccatcagagttgactctgaagggtccgagctcctcaaaggct |
35921652 |
T |
|
| Q |
318 |
ccataccccagtgaggaacagccaggtcctgtgagtttcaaacattatgttgtca |
372 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
35921653 |
ccatatcccagtgaggaacaaccaggtcctgtgagtttcaaacattatgatgtca |
35921707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 35914990 - 35915347
Alignment:
| Q |
18 |
aggaagacataggtgtctttggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattcta |
117 |
Q |
| |
|
||||| ||||||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
35914990 |
aggaaaacataggcatctttagcggtggacttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgccggagattcca |
35915089 |
T |
|
| Q |
118 |
agaagagtacgttcgccactgcatatttcataatgatataagtttgtaagatattcatgtctcagaaatgcatcat-aagaaacaatgtaattatattga |
216 |
Q |
| |
|
|||||||||| || || |||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||||| |||||| || || |||||| |
|
|
| T |
35915090 |
agaagagtacatttgcaactgcatatttcataaggatataagttggtaagataatcatgtctcaggcatgcatcataaagaaataaattagttatat--- |
35915186 |
T |
|
| Q |
217 |
tgatgatgatgattgtttcaccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggc |
316 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||||| |||| |||||||||||| ||||| |||||||| |
|
|
| T |
35915187 |
------tgatgattgtctcaccttcattccaagcatatgggttgcggtataatgtttttccatcagaattgactctgaagggtccgagctcttgaaaggc |
35915280 |
T |
|
| Q |
317 |
tccataccccagtgaggaacagccaggtcctgtgagtttcaaacattatgttgtcagaatcaaagct |
383 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
35915281 |
tccatatcccagtgaggaacaaccaggtcctgcgagtttcaaacattatgttgtcaaaatcgaagct |
35915347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 35934768 - 35935125
Alignment:
| Q |
18 |
aggaagacataggtgtctttggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattcta |
117 |
Q |
| |
|
||||| ||||||| ||||| ||||| ||||||||||||| ||| | ||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
35934768 |
aggaaaacataggcatctttagcagtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactcta |
35934867 |
T |
|
| Q |
118 |
agaagagtacgttcgccactgcatat--ttcataatgatataagtttgtaagatattcatgtctcagaaatgcatcata-agaaacaatgtaattatatt |
214 |
Q |
| |
|
||||||||| || || ||||||||| || ||||||||| | || || |||| |||||||||| |||||||| || ||||| || |||| |||| |
|
|
| T |
35934868 |
agaagagtatatttgcaactgcatatattttataatgataaa--ttggttagatgttcatgtctcttaaatgcataatggagaaaacatttaatcatatc |
35934965 |
T |
|
| Q |
215 |
gatgatgatgatgattgtttcaccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaag |
314 |
Q |
| |
|
||| ||||| | || ||||||| ||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
35934966 |
gattatgattgtcat------accttcactccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctagctcctcaaag |
35935059 |
T |
|
| Q |
315 |
gctccataccccagtgaggaacagccaggtcctgtgagtttcaaacattatgttgtcagaatcaaa |
380 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| |||||||| |||||||| |||| |||||| |
|
|
| T |
35935060 |
gctccatacccaagtgaagaacagccaggtcctgtgtgtttcaaatattatgttatcagcatcaaa |
35935125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 455 - 558
Target Start/End: Original strand, 35915483 - 35915586
Alignment:
| Q |
455 |
atttgtttttatgactcatagttgtaagagtgtaagggttagcccttgagtttaacaaccattgccagaataatttcatcaagagtaaagttcagatgat |
554 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||||||||||| ||| ||||||||||| | |||||| |||||||||| ||||||||||||||||| |
|
|
| T |
35915483 |
atttgtttttaagactcataattgtaagactgtaagggttagcctgagagcttaacaaccatggtcagaatcatttcatcaaaagtaaagttcagatgat |
35915582 |
T |
|
| Q |
555 |
gatg |
558 |
Q |
| |
|
|||| |
|
|
| T |
35915583 |
gatg |
35915586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 555
Target Start/End: Original strand, 35921854 - 35921949
Alignment:
| Q |
460 |
tttttatgactcatagttgtaagagtgtaagggttagcccttgagtttaacaaccattgccagaataatttcatcaagagtaaagttcagatgatg |
555 |
Q |
| |
|
||||||||| ||||| |||||||| ||| |||||||||| ||||||||||| || | || ||| || | ||||||||||||||||| |||||| |
|
|
| T |
35921854 |
tttttatgaatcataattgtaagaaggtatgggttagcccgaaagtttaacaacgatggtcataatcatattatcaagagtaaagttcaaatgatg |
35921949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 6208979 - 6209023
Alignment:
| Q |
79 |
tgtttgagtaggaaaatcctactcctgctggagattctaagaaga |
123 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
6208979 |
tgtttgaataggaaaatccaactcctgctggagactctaaaaaga |
6209023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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