View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14136_high_10 (Length: 254)

Name: NF14136_high_10
Description: NF14136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14136_high_10
NF14136_high_10
[»] chr7 (3 HSPs)
chr7 (13-239)||(11331769-11331996)
chr7 (161-215)||(18129520-18129575)
chr7 (161-207)||(16866455-16866501)
[»] chr2 (4 HSPs)
chr2 (143-210)||(3835223-3835290)
chr2 (161-210)||(31469078-31469127)
chr2 (161-210)||(7932750-7932799)
chr2 (161-210)||(10459273-10459322)
[»] chr4 (2 HSPs)
chr4 (161-219)||(1577613-1577671)
chr4 (182-222)||(49772359-49772399)
[»] chr5 (4 HSPs)
chr5 (161-210)||(39030570-39030619)
chr5 (171-222)||(32332534-32332585)
chr5 (168-210)||(39030624-39030666)
chr5 (161-210)||(33669981-33670030)
[»] chr1 (1 HSPs)
chr1 (161-210)||(3739868-3739917)
[»] chr8 (2 HSPs)
chr8 (169-210)||(43149510-43149550)
chr8 (169-210)||(43473200-43473241)
[»] chr3 (2 HSPs)
chr3 (161-210)||(32221524-32221573)
chr3 (163-207)||(23314730-23314774)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 11331996 - 11331769
Alignment:
Q  13 gaacaatacatagaaaaaattacttgaaaagaaaggaaacttctttccgagtgtgtgttatttattttttgaatggttaagatatactcccttgagtttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  11331996 gaacaatacatagaaaaaattacttgaaaagaaaggaaacttctttctgagtgtgtgttatttattttttgaatggcaaagatatactcccttgagtttc 11331897  T
Q  113 gaatataagc-nnnnnnnnngttaaacaagttagatggatttggtttacatttttaaccaaatacattaactttatttgacttatttttgcttatatttg 211  Q
    ||||||||||          |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  11331896 gaatataagcaaaaaaaaaagttaaacaagttagatggatttggtttacatttttaaccaaatacactaactttatttgacttgtttttgcttatatttg 11331797  T
Q  212 agactggagtaaaacaggtgcgaaaact 239  Q
    |||| ||||||||| ||| |||||||||    
T  11331796 agaccggagtaaaagaggagcgaaaact 11331769  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 18129575 - 18129520
Alignment:
Q  161 atttttaaccaaatacattaactttatttgacttatttt-tgcttatatttgagac 215  Q
    ||||||||| |||||||| ||||||||||||||| |||| | ||||||||||||||    
T  18129575 atttttaactaaatacatcaactttatttgactttttttcttcttatatttgagac 18129520  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 16866455 - 16866501
Alignment:
Q  161 atttttaaccaaatacattaactttatttgacttatttttgcttata 207  Q
    |||||||||||||||||||||||||  |||||  |||||||||||||    
T  16866455 atttttaaccaaatacattaacttttgttgaccaatttttgcttata 16866501  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 3835223 - 3835290
Alignment:
Q  143 tagatggatttggtttacatttttaaccaaatacattaactttatttgacttatttttgcttatattt 210  Q
    |||||| ||||| |||| ||||||||| | ||||||||||||||||||| || ||||| |||||||||    
T  3835223 tagatgtatttgatttaaatttttaactagatacattaactttatttgagtttttttttcttatattt 3835290  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 31469127 - 31469078
Alignment:
Q  161 atttttaaccaaatacattaactttatttgacttatttttgcttatattt 210  Q
    |||||||||||||||||||||||||  |||||  ||||||||||||||||    
T  31469127 atttttaaccaaatacattaacttttgttgaccaatttttgcttatattt 31469078  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 7932799 - 7932750
Alignment:
Q  161 atttttaaccaaatacattaactttatttgacttatttttgcttatattt 210  Q
    ||||| |||||||||| ||||||||  |||||| ||||||||||||||||    
T  7932799 attttgaaccaaatacgttaacttttgttgactaatttttgcttatattt 7932750  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 10459322 - 10459273
Alignment:
Q  161 atttttaaccaaatacattaactttatttgacttatttttgcttatattt 210  Q
    ||||| |||||||||||||||||||  |||||  ||||||||||||||||    
T  10459322 attttgaaccaaatacattaacttttgttgaccaatttttgcttatattt 10459273  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 1577613 - 1577671
Alignment:
Q  161 atttttaaccaaatacattaactttatttgacttatttttgcttatatttgagactgga 219  Q
    ||||||||||| || ||| |||||| || ||||| ||||||||||||||||||||||||    
T  1577613 atttttaaccagatgcataaactttgttcgacttttttttgcttatatttgagactgga 1577671  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 49772399 - 49772359
Alignment:
Q  182 ctttatttgacttatttttgcttatatttgagactggagta 222  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  49772399 ctttgtttgacttttttttgcttatatttgagactggagta 49772359  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 39030619 - 39030570
Alignment:
Q  161 atttttaaccaaatacattaactttatttgacttatttttgcttatattt 210  Q
    |||||||||||||||||||||||||  |||||  ||||||||||||||||    
T  39030619 atttttaaccaaatacattaacttttgttgaccaatttttgcttatattt 39030570  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 32332534 - 32332585
Alignment:
Q  171 aaatacattaactttatttgacttatttttgcttatatttgagactggagta 222  Q
    |||||||| |||| | ||||||||||||||| ||||||||||||| ||||||    
T  32332534 aaatacatcaactatgtttgacttatttttgtttatatttgagaccggagta 32332585  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 39030624 - 39030666
Alignment:
Q  168 accaaatacattaactttatttgacttatttttgcttatattt 210  Q
    ||||||||||||||||||  |||||| ||||||||||||||||    
T  39030624 accaaatacattaacttttgttgactaatttttgcttatattt 39030666  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 33669981 - 33670030
Alignment:
Q  161 atttttaaccaaatacattaactttatttgacttatttttgcttatattt 210  Q
    ||||| ||||||||||||||||||| ||||||  ||||||||||| ||||    
T  33669981 attttaaaccaaatacattaactttttttgaccaatttttgcttacattt 33670030  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 3739868 - 3739917
Alignment:
Q  161 atttttaaccaaatacattaactttatttgacttatttttgcttatattt 210  Q
    |||||||||||||||||||||||||  |||||  ||||||||||||||||    
T  3739868 atttttaaccaaatacattaacttttgttgaccaatttttgcttatattt 3739917  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 43149510 - 43149550
Alignment:
Q  169 ccaaatacattaactttatttgacttatttttgcttatattt 210  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  43149510 ccaaatacattaattttatttgactt-tttttgcttatattt 43149550  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 43473241 - 43473200
Alignment:
Q  169 ccaaatacattaactttatttgacttatttttgcttatattt 210  Q
    ||||||| || |||||||||||||||| ||||||||||||||    
T  43473241 ccaaataaatcaactttatttgacttagttttgcttatattt 43473200  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 32221524 - 32221573
Alignment:
Q  161 atttttaaccaaatacattaactttatttgacttatttttgcttatattt 210  Q
    ||||| |||||||||||||||||||  |||||| ||||||||||| ||||    
T  32221524 attttgaaccaaatacattaacttttgttgactaatttttgcttacattt 32221573  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 23314730 - 23314774
Alignment:
Q  163 ttttaaccaaatacattaactttatttgacttatttttgcttata 207  Q
    |||||||||||||||||| |||| |||||| || |||||||||||    
T  23314730 ttttaaccaaatacattacctttctttgacctacttttgcttata 23314774  T

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