View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14136_high_15 (Length: 218)

Name: NF14136_high_15
Description: NF14136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14136_high_15
NF14136_high_15
[»] chr2 (6 HSPs)
chr2 (2-179)||(33882713-33882890)
chr2 (127-183)||(33881655-33881711)
chr2 (148-181)||(7981129-7981162)
chr2 (134-183)||(17366877-17366926)
chr2 (144-181)||(32519237-32519274)
chr2 (148-181)||(43237705-43237738)
[»] chr1 (6 HSPs)
chr1 (2-183)||(52563731-52563912)
chr1 (127-183)||(52564915-52564971)
chr1 (145-183)||(33030601-33030639)
chr1 (153-182)||(11013009-11013038)
chr1 (153-181)||(33827750-33827778)
chr1 (153-181)||(33840187-33840215)
[»] scaffold1493 (1 HSPs)
scaffold1493 (134-181)||(675-722)
[»] chr8 (3 HSPs)
chr8 (134-181)||(25288047-25288094)
chr8 (131-181)||(41182148-41182198)
chr8 (139-183)||(40422240-40422284)
[»] chr5 (1 HSPs)
chr5 (134-181)||(33735395-33735442)
[»] chr7 (2 HSPs)
chr7 (144-181)||(34454745-34454782)
chr7 (139-183)||(23191114-23191158)
[»] chr4 (1 HSPs)
chr4 (134-183)||(19916736-19916785)
[»] chr3 (2 HSPs)
chr3 (139-184)||(30804108-30804153)
chr3 (139-184)||(33458178-33458223)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 33882713 - 33882890
Alignment:
Q  2 gagtatttttgtcttttccgttttgtttggaactcataagggtatttttgatcattcaagccaatttcaattcagtgagcaagcttctatcctagtcatt 101  Q
    |||||| ||||||||||||||||||||||||| |  ||||||||||||||| |||||||||||||||||||| | | ||||||||||||||||||||||     
T  33882713 gagtatctttgtcttttccgttttgtttggaattagtaagggtatttttgaccattcaagccaatttcaattgattcagcaagcttctatcctagtcatc 33882812  T
Q  102 gtgtgccacatcagtaatcacattgcacatcggcaagaaaacgtaattagaaccaaaactcaagtgattaatatttgc 179  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  33882813 gtgtgccacatcagtaatcacagtgcacatcggcaagaaaacgtaattaggaccaaaattcaagtgattaatatttgc 33882890  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 33881711 - 33881655
Alignment:
Q  127 cacatcggcaagaaaacgtaattagaaccaaaactcaagtgattaatatttgcagtg 183  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  33881711 cacattggcaagaaaacgtaattaggaccaaaactgaagtgattaatatttgcagtg 33881655  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 7981162 - 7981129
Alignment:
Q  148 ttagaaccaaaactcaagtgattaatatttgcag 181  Q
    |||| |||||||||||||||||||||||||||||    
T  7981162 ttaggaccaaaactcaagtgattaatatttgcag 7981129  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 17366877 - 17366926
Alignment:
Q  134 gcaagaaaacgtaattagaaccaaaactcaagtgattaatatttgcagtg 183  Q
    |||| ||||| ||||||| ||||||| |||| ||||||||||||||||||    
T  17366877 gcaaaaaaacctaattaggaccaaaagtcaattgattaatatttgcagtg 17366926  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 32519274 - 32519237
Alignment:
Q  144 gtaattagaaccaaaactcaagtgattaatatttgcag 181  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  32519274 gtaattagaaccaaaagtcaaatgattaatatttgcag 32519237  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 43237705 - 43237738
Alignment:
Q  148 ttagaaccaaaactcaagtgattaatatttgcag 181  Q
    |||| |||||||||||||||||||||||||||||    
T  43237705 ttaggaccaaaactcaagtgattaatatttgcag 43237738  T

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Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 52563912 - 52563731
Alignment:
Q  2 gagtatttttgtcttttccgttttgtttggaactcataagggtatttttgatcattcaagccaatttcaattcagtgagcaagcttctatcctagtcatt 101  Q
    ||||||||||||||||||| |||||||||||| |  |||||||||||| || |||||||||||||||||||| ||| ||||||||||||||||||||||     
T  52563912 gagtatttttgtcttttccattttgtttggaattagtaagggtattttcgaccattcaagccaatttcaattgagtcagcaagcttctatcctagtcatc 52563813  T
Q  102 gtgtgccacatcagtaatcacattgcacatcggcaagaaaacgtaattagaaccaaaactcaagtgattaatatttgcagtg 183  Q
    ||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  52563812 gtgtgccacatcaataatcacagtgcacatcggcaaaaaaacgtaattaggaccaaaactcaagtgattaatatttgcagtg 52563731  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 52564915 - 52564971
Alignment:
Q  127 cacatcggcaagaaaacgtaattagaaccaaaactcaagtgattaatatttgcagtg 183  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  52564915 cacatcggcaagaaaacataattaggaccaaaactcaagtgattaatatttgtagtg 52564971  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 33030601 - 33030639
Alignment:
Q  145 taattagaaccaaaactcaagtgattaatatttgcagtg 183  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  33030601 taattagaaccaaaagtcaaatgattaatatttgcagtg 33030639  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 11013009 - 11013038
Alignment:
Q  153 accaaaactcaagtgattaatatttgcagt 182  Q
    ||||||||||||||||||||||||||||||    
T  11013009 accaaaactcaagtgattaatatttgcagt 11013038  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 181
Target Start/End: Original strand, 33827750 - 33827778
Alignment:
Q  153 accaaaactcaagtgattaatatttgcag 181  Q
    |||||||||||||||||||||||||||||    
T  33827750 accaaaactcaagtgattaatatttgcag 33827778  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 181
Target Start/End: Complemental strand, 33840215 - 33840187
Alignment:
Q  153 accaaaactcaagtgattaatatttgcag 181  Q
    |||||||||||||||||||||||||||||    
T  33840215 accaaaactcaagtgattaatatttgcag 33840187  T

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Target: scaffold1493 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 722 - 675
Alignment:
Q  134 gcaagaaaacgtaattagaaccaaaactcaagtgattaatatttgcag 181  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||||    
T  722 gcaaaaaaacctaattagaaccaaaagtcaaatgattaatatttgcag 675  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 25288047 - 25288094
Alignment:
Q  134 gcaagaaaacgtaattagaaccaaaactcaagtgattaatatttgcag 181  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||||    
T  25288047 gcaaaaaaacctaattagaaccaaaagtcaaatgattaatatttgcag 25288094  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 41182148 - 41182198
Alignment:
Q  131 tcggcaagaaaacgtaattagaaccaaaactcaagtgattaatatttgcag 181  Q
    ||||||| ||||| ||||||| ||||||| |||| ||||||||||||||||    
T  41182148 tcggcaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgcag 41182198  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 40422284 - 40422240
Alignment:
Q  139 aaaacgtaattagaaccaaaactcaagtgattaatatttgcagtg 183  Q
    ||||| ||||||| ||||||| |||| ||||||||||||||||||    
T  40422284 aaaacctaattaggaccaaaagtcaaatgattaatatttgcagtg 40422240  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 33735442 - 33735395
Alignment:
Q  134 gcaagaaaacgtaattagaaccaaaactcaagtgattaatatttgcag 181  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||||    
T  33735442 gcaaaaaaacctaattagaaccaaaagtcaaatgattaatatttgcag 33735395  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 34454745 - 34454782
Alignment:
Q  144 gtaattagaaccaaaactcaagtgattaatatttgcag 181  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  34454745 gtaattagaaccaaaagtcaaatgattaatatttgcag 34454782  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 23191114 - 23191158
Alignment:
Q  139 aaaacgtaattagaaccaaaactcaagtgattaatatttgcagtg 183  Q
    ||||| ||||||| ||||||| |||| ||||||||||||||||||    
T  23191114 aaaacctaattaggaccaaaagtcaaatgattaatatttgcagtg 23191158  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 19916785 - 19916736
Alignment:
Q  134 gcaagaaaacgtaattagaaccaaaactcaagtgattaatatttgcagtg 183  Q
    |||| ||||| ||||||| ||||||| |||| ||||||||||||||||||    
T  19916785 gcaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgcagtg 19916736  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 30804108 - 30804153
Alignment:
Q  139 aaaacgtaattagaaccaaaactcaagtgattaatatttgcagtga 184  Q
    ||||| ||||||| ||||||| |||| |||||||||||||||||||    
T  30804108 aaaacctaattaggaccaaaagtcaaatgattaatatttgcagtga 30804153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 33458178 - 33458223
Alignment:
Q  139 aaaacgtaattagaaccaaaactcaagtgattaatatttgcagtga 184  Q
    ||||| ||||||| ||||||| |||| |||||||||||||||||||    
T  33458178 aaaacctaattaggaccaaaagtcaaatgattaatatttgcagtga 33458223  T

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