View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14136_high_4 (Length: 365)
Name: NF14136_high_4
Description: NF14136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14136_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 88 - 348
Target Start/End: Original strand, 41445419 - 41445678
Alignment:
| Q |
88 |
cattcccgcgtgaaggcaagacaatccgttacctaatactaatcccatctttctgttagttgcttctccacaatactaaaaatgctgttacccttatcct |
187 |
Q |
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| T |
41445419 |
cattcccgcgtgaagacaagacaatccgttacctaataccaatcccatctttctgttagttgcttctccacaatactaaaaatgttgttacccttatcct |
41445518 |
T |
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| Q |
188 |
tcatgcatgcatatttcaccttttaactccttataattttgcttcttattttcatttattcaattcaacttttatgccttttgcagttatgctggatatt |
287 |
Q |
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| T |
41445519 |
tcatgcatgcatattgcaccttttaactccttataattttgcttcttattttcatttattcaattcaac-tttatgctttttgcagtgatgctggatatt |
41445617 |
T |
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| Q |
288 |
accatcttcagggaacatgggagtttgtttcagcgctcaagttataactgaacatccttgt |
348 |
Q |
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| T |
41445618 |
accatcttcagggaacatgggagtttgtttcagcgctcaagttataactgaacatccttgt |
41445678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 276
Target Start/End: Original strand, 41453573 - 41453714
Alignment:
| Q |
139 |
tctgttagttgcttctccacaat----actaaaaatgctgttacccttatccttcatgcatgcatatttcaccttttaactccttataattttgcttctt |
234 |
Q |
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| T |
41453573 |
tctgttagttgcttcttcacaaactgcactaaaaatgttcttacccttatccttcatgcatgcatatttcaccttttacctcattataactttacttctt |
41453672 |
T |
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| Q |
235 |
attttcatttattcaattcaacttttatgccttttgcagtta |
276 |
Q |
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| T |
41453673 |
attttcatttattcaattcaactttcatgctttttgcagtta |
41453714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 41440894 - 41440989
Alignment:
| Q |
233 |
ttattttcatttattcaattcaacttttatgccttt-tgcagttatgctggatattaccatcttcagggaacatgggagtttgtttcagcgctcaa |
327 |
Q |
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| T |
41440894 |
ttatttccatttattcaattcaactttcatttgtttctgcagttttgcttaatattgcaatcttcagggaacatgggagtttgtttgagtgctcaa |
41440989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 41453436 - 41453494
Alignment:
| Q |
42 |
acaaaattagtgggaaaaggaggaaaatgttagaagtccacaacgtcattcccgcgtgaa |
101 |
Q |
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| T |
41453436 |
acaaagttagtgggaaacggagcaaaatgtt-gaagtccacaaagtcattcccgcgtgaa |
41453494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 41453715 - 41453762
Alignment:
| Q |
301 |
aacatgggagtttgtttcagcgctcaagttataactgaacatccttgt |
348 |
Q |
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| T |
41453715 |
aacatgggagtttgtttgagcgctcaagttaaaactgaacttccttgt |
41453762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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