View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14136_high_5 (Length: 303)

Name: NF14136_high_5
Description: NF14136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14136_high_5
NF14136_high_5
[»] chr2 (1 HSPs)
chr2 (1-289)||(37298478-37298766)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 37298766 - 37298478
Alignment:
Q  1 tattcaaaactaagataacacctaacaaaagaaaatactaaaaattaataaagtcaacttgacgtaatgaagatttctgaaaaatttatttgtcaattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37298766 tattcaaaactaagataacacctaacaaaagaaaatactaaaaattaataaagtcaacttgacgtaatgaagatttctgaaaaatttatttgtcaattat 37298667  T
Q  101 gcacaaaaagttaacaacacttgcatatcaaaactaaacaatatattatcaattatcctcaatgtatcctccaagctattcaatgaccacaacaagcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37298666 gcacaaaaagttaacaacacttgcatatcaaaactaaacaatatattatcaattatcctcaatgtatcctccaagctattcaatgaccacaacaagcttc 37298567  T
Q  201 tcatagttacacaaagaattttgtttgataacgacttctaattaatgatatgtagtctatgagttacacaaagagtttcattagagaag 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37298566 tcatagttacacaaagaattttgtttgataacgacttctaattaatgatatgtagtctatgagttacacaaagagtttcattagagaag 37298478  T

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