View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14136_high_6 (Length: 299)
Name: NF14136_high_6
Description: NF14136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14136_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 5718068 - 5717793
Alignment:
| Q |
1 |
aaacactaaattaaggtaaaacaaaaacattatagtaaaagcatcctgcaaatcataaagtgtgaaattccaaaattataatatcaagtaatttaagaaa |
100 |
Q |
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| T |
5718068 |
aaacactaaattaaggtaaaacaaaaacattatagtaaaaatatgctgcaaatcataaagtgtgaaattccaaaattataatatcaagtaatttaagaaa |
5717969 |
T |
|
| Q |
101 |
aagttaactgctgcaataacaaacaatgttgagttcaatcattatatacttctataatttgtcatgattggatttgcagtgagattgatggaatcaaaat |
200 |
Q |
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| T |
5717968 |
aagttaactgctgcaataacaaacaatgttgagttcaatcattatatacttctataatttgtcatgattggatttgtagtgagattgatggaatcaaaat |
5717869 |
T |
|
| Q |
201 |
gaactaccgcgattttaataaaagttacattttaaagcttcaacaaaatcacagtctcactattgtttttccactt |
276 |
Q |
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| T |
5717868 |
gaactgccgcgattttgataaaagttacattttaaagcttcaacaaaatcacagtctcactgttgtttttccactt |
5717793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 2047347 - 2047311
Alignment:
| Q |
214 |
tttaataaaagttacattttaaagcttcaacaaaatc |
250 |
Q |
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| T |
2047347 |
tttaacaaaagttacattttgaagcttcaacaaaatc |
2047311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 23955534 - 23955569
Alignment:
| Q |
220 |
aaaagttacattttaaagcttcaacaaaatcacagt |
255 |
Q |
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| T |
23955534 |
aaaagttacattttaaagcttcaacaaaatcacagt |
23955569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 13712324 - 13712362
Alignment:
| Q |
213 |
ttttaataaaagttacattttaaagcttcaacaaaatca |
251 |
Q |
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|||| ||||||||||||||||| |||||||||||||||| |
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| T |
13712324 |
ttttgataaaagttacattttagagcttcaacaaaatca |
13712362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 5376989 - 5377033
Alignment:
| Q |
211 |
gattttaataaaagttacattttaaagcttcaacaaaatcacagt |
255 |
Q |
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|||||| ||||||| ||||||||| |||||||||||||| ||||| |
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| T |
5376989 |
gattttgataaaagctacattttagagcttcaacaaaattacagt |
5377033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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