View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14136_low_15 (Length: 237)
Name: NF14136_low_15
Description: NF14136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14136_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 23598489 - 23598620
Alignment:
| Q |
42 |
ggtagaaaaataagaagagaaacaggttacccaagtccagtgatgttttaaaatgatgtttgatggttaattggtcaagagagacaaagtgaagctactg |
141 |
Q |
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| T |
23598489 |
ggtagaaaaataagaagagaaacaggttacccaagtccagtgatgttttaaaatgatgtttgatggttaattggtcaagagagacaaagtgaagctactg |
23598588 |
T |
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| Q |
142 |
taagtatttttgtactcttgactcgttcaaaca |
174 |
Q |
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| T |
23598589 |
taagtatttttgtactc-tgactcgttcaaaca |
23598620 |
T |
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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 24564294 - 24564353
Alignment:
| Q |
132 |
gaagctactgtaagtatttttgtactcttgactcgttcaaacaattttcaacattagaaat |
192 |
Q |
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| T |
24564294 |
gaagctactataagtattttagtactct-gactcattcaaacaattttcaacactagaaat |
24564353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30180660 - 30180692
Alignment:
| Q |
1 |
tttcaaatagatgttcaaagatcactactctaa |
33 |
Q |
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| T |
30180660 |
tttcaaatagatgttcaaatatcactactctaa |
30180692 |
T |
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