View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14136_low_2 (Length: 401)
Name: NF14136_low_2
Description: NF14136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14136_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 6 - 386
Target Start/End: Original strand, 22095982 - 22096362
Alignment:
| Q |
6 |
gtaataagccttataaacctcctctggttctagttgacttcccacacaatgatcaaatcatgtcgttcatgcatcaatttattgaaaatgtggggatgtt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22095982 |
gtaataagccttataaacctcctctggttctagttgacttcccacacaatgatcaaatcatgtcgttcatgcatcaatttattgaaaatgtggggatgtg |
22096081 |
T |
|
| Q |
106 |
gaatgtgatggtcattgtggattccttgttcttgcaggcctacatggtaagttagttgatgatcatcacattatacatcttaatctttcacgagagttaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22096082 |
gaatgtgatggtcattgtggattccttgttcttgcaggcctacatggtaagttagttgatgatcatcacattatccatcttaatctttcacgagagttaa |
22096181 |
T |
|
| Q |
206 |
ccagtaacttttatcttcaactaattgggggcaaataagcaattcaacgaggtcaaacatgctatgaccaccgattaaattggctttgcacttaggcata |
305 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||| |
|
|
| T |
22096182 |
ccagtaactgttatcttcaactaattgggggcaaataagcaatttgacgaggtcaaacatgttatgaccactgattgaattggctttgcacttagggata |
22096281 |
T |
|
| Q |
306 |
aaagtgttattatgccatatatcaactttcttattgtacaaaaatataagtatgtggtagtttacctgtccgtcaaaatat |
386 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22096282 |
aaagtgtaattatgtcatatatcaactttcttattgtacaaaaatataagtatgtggtagtttacctgtccgtcaaaatat |
22096362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 29653156 - 29653022
Alignment:
| Q |
73 |
catgcatcaatttattgaaaatgtgg-ggatgttgaatgtgatggtcattgtggattccttgttcttgcaggcctacatggtaagttagttgatgatcat |
171 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||| || | |||||||||||| ||| | || |||| ||||||| |
|
|
| T |
29653156 |
catgcatcaatttattgaaaatgtggtggatgttgaaggtgatgatcaatgtggattttatgatgttgcaggcctacgtggaatgtatgttggtgatcat |
29653057 |
T |
|
| Q |
172 |
cacattatacatcttaatctttcacgagagttaac |
206 |
Q |
| |
|
|| || ||| |||| |||||| ||||| |||||| |
|
|
| T |
29653056 |
catatcatatgtcttgatcttttacgagtgttaac |
29653022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 11739293 - 11739402
Alignment:
| Q |
42 |
acttcccacacaatgatcaaatcatgtcgttcatgcatcaatttattgaaaatgtggggatgttgaatgtgatggtcattgtggattccttgttcttgca |
141 |
Q |
| |
|
|||||||||| || || ||||| |||||||||||||| ||||||||||||| ||| |||| | | |||| |||||||||||||| | ||| ||||| |
|
|
| T |
11739293 |
acttcccacataaagaccaaatgttgtcgttcatgcatgaatttattgaaaaggtgtggatatagctagtgacggtcattgtggatttcgtgtagttgca |
11739392 |
T |
|
| Q |
142 |
ggcctacatg |
151 |
Q |
| |
|
|| ||||||| |
|
|
| T |
11739393 |
ggtctacatg |
11739402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 367
Target Start/End: Complemental strand, 29652892 - 29652856
Alignment:
| Q |
331 |
ctttcttattgtacaaaaatataagtatgtggtagtt |
367 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
29652892 |
ctttcttattgcacaaaaatataagtatatggtagtt |
29652856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 10495441 - 10495627
Alignment:
| Q |
1 |
tgatagtaataagccttataaacctcctctggttctagttgacttcccacacaatgatcaaatcat-gtcgttcatgcatcaatttattgaaaatgtgg- |
98 |
Q |
| |
|
||||||||||||| | ||| ||||||| | ||| |||||| ||||||||||| || |||| || |||||||||| |||||||||| ||||| || |
|
|
| T |
10495441 |
tgatagtaataagtttcctaaccctcctccgattcaagttgatttcccacacaa-gaacaaaatatcgtcgttcatgtatcaatttatcgaaaaggttat |
10495539 |
T |
|
| Q |
99 |
ggatgttgaatgtgatggtcattgtggattccttgttcttgcaggcctacatggtaagttagttgatgatcatcacattatacatctt |
186 |
Q |
| |
|
|||||| || |||||||||||||||||| ||| |||| ||||||||| |||||| |||||||||||||| ||||| |||||| |
|
|
| T |
10495540 |
ggatgtcaaagatgatggtcattgtggattttgcgttgttgcgggcctacataataagtttgttgatgatcatcatattatccatctt |
10495627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 15553518 - 15553377
Alignment:
| Q |
68 |
tcgttcatgcatcaatttattgaaaatgtgggga-tgttgaatgtgatggtcattgtggattccttgttcttgcaggcctacatggtaagttagttgatg |
166 |
Q |
| |
|
|||||||||||| ||||| || |||| ||| || ||| ||| ||||||||||||||||||| |||| ||| | || ||||||||| || |||||| |
|
|
| T |
15553518 |
tcgttcatgcattaatttttttaaaacatggtgaatgtcgaaggtgatggtcattgtggattatgtgttgttgaaagcttacatggtatgtctattgatg |
15553419 |
T |
|
| Q |
167 |
atcatcacattatacatcttaatctttcacgagagttaacca |
208 |
Q |
| |
|
||||||||||||| | ||| |||||| | ||||| |||||| |
|
|
| T |
15553418 |
atcatcacattatctagcttgatcttttatgagagctaacca |
15553377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 23168251 - 23168323
Alignment:
| Q |
57 |
atcaaatcatgtcgttcatgcatcaatttattgaaaatgtgg-ggatgttgaatgtgatggtcattgtggatt |
128 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| |||| |||| |||| | |||||||| ||||||||| |||| |
|
|
| T |
23168251 |
atcaaatctcgtcattcatgcatcaatttattaaaaaggtggtggatatcgaatgtgaaggtcattgttgatt |
23168323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 44547131 - 44547079
Alignment:
| Q |
41 |
gacttcccacacaatgatcaaatcatgtcgttcatgcatcaatttattgaaaa |
93 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||||| ||||||||||||| |
|
|
| T |
44547131 |
gacttcccacacaagaatcaaatattgtcattcatgcattaatttattgaaaa |
44547079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University