View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14136_low_9 (Length: 274)

Name: NF14136_low_9
Description: NF14136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14136_low_9
NF14136_low_9
[»] chr4 (20 HSPs)
chr4 (7-255)||(47680686-47680935)
chr4 (108-274)||(47681032-47681200)
chr4 (168-274)||(10396352-10396457)
chr4 (117-270)||(51681424-51681575)
chr4 (125-261)||(8445753-8445883)
chr4 (64-262)||(47680445-47680650)
chr4 (102-274)||(11197096-11197267)
chr4 (168-274)||(34946228-34946333)
chr4 (179-255)||(47680316-47680392)
chr4 (88-274)||(11307407-11307591)
chr4 (169-274)||(51681187-51681290)
chr4 (69-222)||(26473478-26473633)
chr4 (222-274)||(1868040-1868092)
chr4 (168-261)||(2917270-2917362)
chr4 (153-274)||(12717946-12718066)
chr4 (173-274)||(11307696-11307796)
chr4 (51-202)||(11307186-11307339)
chr4 (117-228)||(32864561-32864673)
chr4 (231-274)||(10396129-10396172)
chr4 (224-274)||(16559298-16559348)
[»] chr8 (11 HSPs)
chr8 (51-274)||(5981559-5981783)
chr8 (117-274)||(2954342-2954500)
chr8 (223-274)||(12156775-12156826)
chr8 (233-274)||(2954625-2954666)
chr8 (223-271)||(11576034-11576082)
chr8 (218-270)||(14028310-14028362)
chr8 (155-242)||(23753048-23753133)
chr8 (12-98)||(5981444-5981530)
chr8 (230-274)||(5981850-5981894)
chr8 (21-108)||(14028404-14028491)
chr8 (241-270)||(3671262-3671291)
[»] chr3 (17 HSPs)
chr3 (100-274)||(40195937-40196111)
chr3 (100-274)||(17732021-17732192)
chr3 (100-274)||(19033252-19033423)
chr3 (156-273)||(54017666-54017783)
chr3 (124-274)||(23162077-23162226)
chr3 (169-274)||(43978692-43978796)
chr3 (160-270)||(16869633-16869744)
chr3 (123-274)||(16143327-16143479)
chr3 (166-265)||(32200973-32201071)
chr3 (223-274)||(16871076-16871127)
chr3 (224-274)||(43978986-43979036)
chr3 (233-274)||(43481588-43481629)
chr3 (122-226)||(32201211-32201317)
chr3 (137-211)||(51677524-51677599)
chr3 (231-273)||(23162467-23162509)
chr3 (225-270)||(23161832-23161876)
chr3 (76-136)||(23162308-23162368)
[»] chr5 (14 HSPs)
chr5 (125-274)||(14168826-14168975)
chr5 (125-274)||(41341348-41341496)
chr5 (80-266)||(13112839-13113025)
chr5 (225-274)||(41340271-41340320)
chr5 (223-274)||(3294933-3294984)
chr5 (223-274)||(5963673-5963724)
chr5 (141-274)||(36389111-36389241)
chr5 (102-266)||(13042866-13043029)
chr5 (192-274)||(13042672-13042753)
chr5 (192-274)||(13112670-13112751)
chr5 (20-115)||(5963761-5963856)
chr5 (222-274)||(34103543-34103595)
chr5 (187-266)||(13042495-13042572)
chr5 (187-266)||(13112493-13112570)
[»] chr7 (13 HSPs)
chr7 (125-268)||(8802385-8802528)
chr7 (117-274)||(11776181-11776331)
chr7 (83-266)||(21416266-21416449)
chr7 (80-265)||(27597830-27598017)
chr7 (160-274)||(23578121-23578234)
chr7 (223-274)||(48071376-48071427)
chr7 (172-266)||(2463096-2463190)
chr7 (233-274)||(11776464-11776505)
chr7 (222-274)||(27391886-27391937)
chr7 (102-200)||(23568901-23569000)
chr7 (122-218)||(35589601-35589698)
chr7 (153-204)||(27938700-27938751)
chr7 (233-270)||(45100184-45100221)
[»] chr1 (14 HSPs)
chr1 (77-273)||(43834339-43834535)
chr1 (125-274)||(31973452-31973601)
chr1 (117-274)||(4392027-4392176)
chr1 (122-266)||(34665934-34666078)
chr1 (102-202)||(5821883-5821982)
chr1 (219-274)||(25294904-25294959)
chr1 (223-274)||(15327846-15327897)
chr1 (223-274)||(4392309-4392360)
chr1 (117-202)||(4753112-4753198)
chr1 (235-274)||(27686641-27686680)
chr1 (225-262)||(25294960-25294997)
chr1 (128-227)||(5821990-5822089)
chr1 (231-274)||(12466281-12466324)
chr1 (168-228)||(47159144-47159204)
[»] chr6 (12 HSPs)
chr6 (34-274)||(7301417-7301649)
chr6 (76-266)||(11637846-11638038)
chr6 (223-274)||(21130174-21130225)
chr6 (107-228)||(15092224-15092346)
chr6 (225-274)||(22605372-22605421)
chr6 (125-204)||(22605163-22605241)
chr6 (231-273)||(21297251-21297293)
chr6 (152-206)||(21118644-21118698)
chr6 (231-262)||(6250082-6250113)
chr6 (231-274)||(7301701-7301744)
chr6 (169-226)||(28940923-28940980)
chr6 (238-274)||(22605137-22605173)
[»] chr2 (9 HSPs)
chr2 (120-274)||(40053340-40053495)
chr2 (173-266)||(19548086-19548177)
chr2 (168-274)||(44981880-44981985)
chr2 (155-274)||(11727763-11727881)
chr2 (231-274)||(13792611-13792654)
chr2 (102-272)||(28226527-28226694)
chr2 (111-202)||(39334277-39334369)
chr2 (231-274)||(28226335-28226378)
chr2 (231-266)||(30220006-30220041)
[»] scaffold0548 (2 HSPs)
scaffold0548 (173-274)||(4186-4286)
scaffold0548 (88-202)||(3964-4080)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 47680686 - 47680935
Alignment:
Q  7 gagatccatgtacctgatgccttaagattttgggtaagag-tatagtgtccaagtcttttattggtccaggacgtttaacccattgtcgctcccgg-gct 104  Q
    |||| |||| |||||||||||||||| ||||||||  ||| | | ||||| |||||| |||||||||| ||||||||||| ||||||||||||||  |||    
T  47680686 gagacccatatacctgatgccttaaggttttgggtg-gagatgtggtgtctaagtctcttattggtcctggacgtttaactcattgtcgctcccgatgct 47680784  T
Q  105 ccccagactcctccaacaactggtatcagagccctgattaggcttggtgggg-agcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgat 203  Q
    || ||||| || |||||||||||||||||||||||| |||||||  |||||| |||||||| | |||||||||| |||||| |||||||||||||||||     
T  47680785 cctcagacacc-ccaacaactggtatcagagccctggttaggctcagtgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgac 47680883  T
Q  204 tcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtccc 255  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  47680884 tcacacttgagggggagattgttgggaaatcaagtgtgagtgattatgtccc 47680935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 108 - 274
Target Start/End: Original strand, 47681032 - 47681200
Alignment:
Q  108 cagactcctccaacaactggtatcagagccctgattaggcttggtgggg-agcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgatt-- 204  Q
    |||||||| |||||||||| ||||||||||||  |||||||  |||||| |||||||| | |||||||||| |||||| ||||||||||||||||| |      
T  47681032 cagactcc-ccaacaactgatatcagagccctagttaggctcagtgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactaa 47681130  T
Q  205 catacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    || |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||| |||||||    
T  47681131 cacacttgagggggagattgttgggaaataaagtgtgagtgattatgtcccgcatcgattagaaatggag 47681200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 10396352 - 10396457
Alignment:
Q  168 gatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactagg 267  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||| || || ||||||     
T  10396352 gatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagggggagattgtt-ggaaatcaagtgtgagtgattatgtctcatattgactaga 10396450  T
Q  268 aatggag 274  Q
    |||||||    
T  10396451 aatggag 10396457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 270
Target Start/End: Original strand, 51681424 - 51681575
Alignment:
Q  117 ccaacaactggtatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgaggg 216  Q
    |||||||||| ||||||||| ||  |||||||  |||||| ||||||| ||||||||| ||||||||| || |||||||||||||| ||| |||||||||    
T  51681424 ccaacaactgatatcagagctctcgttaggctcagtgggg-gcgggagtgagatcctaatgtggatcaggccagtgatgtgggtgactcacacttgaggg 51681522  T
Q  217 ggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaat 270  Q
      |||||| |||||  |||||||| |||||||||||||||||| ||||||||||    
T  51681523 aaagattgctgggt-ttcaagtgtaagtgattatgtcccacattgactaggaat 51681575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 261
Target Start/End: Original strand, 8445753 - 8445883
Alignment:
Q  125 tggtatcagagccctgattaggcttggtgggg-agcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagatt 223  Q
    |||||||||||||||| ||||||| ||||||| |||||||| | |||||||||||||||      |||||||||||||| ||| ||||||||||||||||    
T  8445753 tggtatcagagccctggttaggctcggtggggtagcgggagtgggatcctagtgtggat------agtgatgtgggtgaatcacacttgagggggagatt 8445846  T
Q  224 gttgggtaatcaagtgtgagtgattatgtcccacatcg 261  Q
    |||||||  |||||| | ||||||||||||||||||||    
T  8445847 gttgggt-ttcaagtctaagtgattatgtcccacatcg 8445883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 262
Target Start/End: Original strand, 47680445 - 47680650
Alignment:
Q  64 ttattggtccaggacgtttaacccattgtcgctcccgg-gctccccagactcctccaacaactggtatcagagccctgattaggcttggtgg-ggagcgg 161  Q
    |||||||||| | ||||||||| ||||| |||||||   ||||| || ||||| |||||||||| ||| ||||||||  |||||||  |||| |||||||    
T  47680445 ttattggtcctgaacgtttaactcattgccgctcccaatgctcctcatactcc-ccaacaactgatattagagccctagttaggctcagtggtggagcgg 47680543  T
Q  162 gagcgagatcctagtgtggatcatgctagt------gatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtccc 255  Q
    |||   |||||||||| |||||||||||||      ||| ||||||| ||| |||||||||| ||||||||||  ||| |||||||||||||||||||||    
T  47680544 gagtaggatcctagtgaggatcatgctagtactagtgatatgggtgactcacacttgaggggaagattgttggaaaattaagtgtgagtgattatgtccc 47680643  T
Q  256 acatcga 262  Q
    |||||||    
T  47680644 acatcga 47680650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 274
Target Start/End: Original strand, 11197096 - 11197267
Alignment:
Q  102 gctccccagactcctccaacaa-ctggtatcagagccctgattaggcttggtgggg-agcgggagcgagatcctagtgtggatcatgctagtgatgtggg 199  Q
    |||||||||||||| | ||||| ||||||||||||||  | ||||||||| ||||| || ||||||| |||||| ||||||||||| |||||||||||||    
T  11197096 gctccccagactcc-caaacaaactggtatcagagcctag-ttaggcttgctgggggagtgggagcgggatcctggtgtggatcatcctagtgatgtggg 11197193  T
Q  200 tgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||| | | ||||||  |||||||||||    || |||||||||||||||||| | |||||||||||| |||||||    
T  11197194 tgagtaacacttgattgggagattgtt-aaaaaccaagtgtgagtgattatgcctcacatcgactagaaatggag 11197267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 34946333 - 34946228
Alignment:
Q  168 gatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactagg 267  Q
    |||| |||| |||||||| |||||||||||||||| ||| ||||||| ||||||||||| || ||||||||||||||||| |||||||||||| ||| |     
T  34946333 gatcatagtttggatcatcctagtgatgtgggtgagtcacacttgagagggagattgtt-ggaaatcaagtgtgagtgataatgtcccacatcaacttga 34946235  T
Q  268 aatggag 274  Q
    |||||||    
T  34946234 aatggag 34946228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 47680316 - 47680392
Alignment:
Q  179 ggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtccc 255  Q
    |||||| |||| |||||||||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  47680316 ggatcaggctaatgatgtgggtgactcacagttgagggggagattgttgggaaatcaagtgtgagtgattatgtccc 47680392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 274
Target Start/End: Complemental strand, 11307591 - 11307407
Alignment:
Q  88 attgtcgctcccgg-gctccccagactcctccaacaa-ctggtatcagagccctgattaggcttggtgggga-gcgggagcgagatcctagtgtggatca 184  Q
    |||||||||||| | |||||||||||||| ||||||| ||||||||| ||| ||| ||||||||| |||||  ||||||| | | |||||||||||||||    
T  11307591 attgtcgctcccagtgctccccagactcc-ccaacaaactggtatcatagctctggttaggcttgatgggggtgcgggagtgggttcctagtgtggatca 11307493  T
Q  185 tgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
     |||||||||||| |||||||  ||| || |||||||||| |  | |||||||||||| ||| |||||| |||||| ||||| |||||||    
T  11307492 ggctagtgatgtgtgtgattc--actcga-ggggagattg-tcagaaatcaagtgtgactgactatgtctcacatcaactagaaatggag 11307407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 51681187 - 51681290
Alignment:
Q  169 atcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactagga 268  Q
    ||||| |||||||||| ||||||||||||||||| ||| |||| ||   |||||||||||| ||||||||||| ||||||||||  | ||||||||||||    
T  51681187 atccttgtgtggatcaggctagtgatgtgggtgactcacacttaagttagagattgttgggaaatcaagtgtgggtgattatgt--ctcatcgactagga 51681284  T
Q  269 atggag 274  Q
    ||||||    
T  51681285 atggag 51681290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 26473633 - 26473478
Alignment:
Q  69 ggtccaggacgtttaacccattgtcgctcccgg-gctccccagactcctccaacaactggtatcagagccctgattaggcttggtgggg--agcgggagc 165  Q
    ||||| ||||||||| ||||||| | ||||||| |||||||  ||||| ||| ||| ||||||||||||| || ||| ||| |||||||  |||||||||    
T  26473633 ggtcctggacgtttagcccattggcactcccggcgctccccgaactcc-ccagcaattggtatcagagccttggttaagctcggtggggggagcgggagc 26473535  T
Q  166 gagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagat 222  Q
    | |||||| || ||||||| || |||||||||||||| ||| | |||||||||||||    
T  26473534 gggatccttgtctggatcaggcaagtgatgtgggtgactcacaattgagggggagat 26473478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 1868040 - 1868092
Alignment:
Q  222 ttgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1868040 ttgtcgggtaatcaagtgtgagtgattatgtcccacatcgactaagaatggag 1868092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 2917362 - 2917270
Alignment:
Q  168 gatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcg 261  Q
    ||||| ||||||||| |  |||||||||||||||| ||| |||||||||| |||||||| || ||||||  ||||||||| |||||||||||||    
T  2917362 gatccaagtgtggattagcctagtgatgtgggtgagtcacacttgaggggaagattgtt-ggaaatcaatcgtgagtgataatgtcccacatcg 2917270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 274
Target Start/End: Complemental strand, 12718066 - 12717946
Alignment:
Q  153 ggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgt 252  Q
    |||||| ||||||  ||||||||| |||||||| |||||||||||||| | ||| |||||||| ||| ||||||  | ||||||||||||| ||| ||||    
T  12718066 ggggagtgggagcaggatcctagtatggatcatcctagtgatgtgggttagtcacacttgaggaggaaattgtt-agaaatcaagtgtgagagataatgt 12717968  T
Q  253 cccacatcgactaggaatggag 274  Q
     |||||| || ||| |||||||    
T  12717967 tccacattgattagaaatggag 12717946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 274
Target Start/End: Complemental strand, 11307796 - 11307696
Alignment:
Q  173 tagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatgg 272  Q
    |||||||||||| ||||||||||||| ||| ||| | |||||||| |||||| |  | ||| |||||||||||||| |||| |||||||||||  |||||    
T  11307796 tagtgtggatcaagctagtgatgtggatgactcacatttgaggggaagattg-tcagaaattaagtgtgagtgattgtgtctcacatcgactataaatgg 11307698  T
Q  273 ag 274  Q
    ||    
T  11307697 ag 11307696  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 11307339 - 11307186
Alignment:
Q  51 gtgtccaagtcttttattggtccaggacgtttaacccattgtcgctcccgg-gctccccagactcctccaaca-actggtatcagagccctgattaggct 148  Q
    ||||| |||||| ||| |||||| | || |||| |  |||||||||||| | |||||| ||||||| |||||| |||||||||| ||||||| || ||||    
T  11307339 gtgtctaagtctcttagtggtcctgaacatttagcttattgtcgctcccagtgctccctagactcc-ccaacatactggtatcatagccctggttgggct 11307241  T
Q  149 tggtgggga-gcgggagcgagatcctagtgtggatcatgctagtgatgtgggtga 202  Q
    || |||||  ||||||| | | ||||||||||||||| | |||||||||| ||||    
T  11307240 tgatgggggtgcgggagtgggttcctagtgtggatcaagatagtgatgtgtgtga 11307186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 32864561 - 32864673
Alignment:
Q  117 ccaacaactggtatcagagccctgattaggcttggtgggga-gcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagg 215  Q
    |||||||  ||||| |||||| || || |||||||| | || ||||||| |||||||||||||||||||  |||| ||||||| ||| ||| | ||||||    
T  32864561 ccaacaaagggtattagagccatggtttggcttggttgagaagcgggagtgagatcctagtgtggatcagactagcgatgtggatgactcacaattgagg 32864660  T
Q  216 gggagattgttgg 228  Q
    || | ||||||||    
T  32864661 ggaaaattgttgg 32864673  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 10396129 - 10396172
Alignment:
Q  231 aatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||||||||||||||| ||||||||| || |||||||    
T  10396129 aatcaagtgtgagtgattatgtctcacatcgacaagaaatggag 10396172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 16559298 - 16559348
Alignment:
Q  224 gttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||| ||||||||||||| ||||||||  |||||||| |||||||||||    
T  16559298 gttgggaaatcaagtgtgagcgattatgttacacatcgattaggaatggag 16559348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 51 - 274
Target Start/End: Complemental strand, 5981783 - 5981559
Alignment:
Q  51 gtgtccaagtcttttattggtccaggacgtttaacccattgtcgctcccgg-gctccccagactcctccaacaactggtatcagagccctgattaggctt 149  Q
    ||||| |||||| ||| ||||||  || ||||| ||||||| ||||| ||  ||||||| |||||| |||| || |||||||||| ||||| |||||||     
T  5981783 gtgtctaagtctcttactggtccttgaagtttagcccattgccgctctcgacgctccccggactcccccaagaaatggtatcagaaccctggttaggctc 5981684  T
Q  150 ggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgatta 249  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||||| || |||||||||||||||||||    
T  5981683 ggtggggagtgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcacgcttgagggggagattgtttggaaatcaagtgtgagtgatta 5981584  T
Q  250 tgtcccacatcgactaggaatggag 274  Q
    |||||||||||||||||||||||||    
T  5981583 tgtcccacatcgactaggaatggag 5981559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 117 - 274
Target Start/End: Complemental strand, 2954500 - 2954342
Alignment:
Q  117 ccaacaactggtatcagagccct-gattaggcttggtgggg-agcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgag 214  Q
    |||||||||||| |||||||||| | ||||||| ||||||| || |||||| |||||||||||||||||| ||||||||||||||||| ||| |||||||    
T  2954500 ccaacaactggtttcagagcccttggttaggctcggtgggggagtgggagcaagatcctagtgtggatcaagctagtgatgtgggtgactcacacttgag 2954401  T
Q  215 ggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||||| ||  |||||||||||||||||| |||||||||||||||||||||||    
T  2954400 ggggagattgttgagt-ttcaagtgtgagtgattatttcccacatcgactaggaatggag 2954342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 12156826 - 12156775
Alignment:
Q  223 tgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12156826 tgttgggtaatcaagtgtgagtgattatgtcccacatcgattaggaatggag 12156775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 2954666 - 2954625
Alignment:
Q  233 tcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  2954666 tcaagtgtgagtgattatgtcccacatagactaggaatggag 2954625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 11576034 - 11576082
Alignment:
Q  223 tgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatg 271  Q
    |||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  11576034 tgttgggtaatcaagtgtgagtcattatgtcccacgtcgactaagaatg 11576082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 14028310 - 14028362
Alignment:
Q  218 gagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaat 270  Q
    ||||||| |||  |||||||||||||||||||||||| |||||||||||||||    
T  14028310 gagattgctggaaaatcaagtgtgagtgattatgtcctacatcgactaggaat 14028362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 23753133 - 23753048
Alignment:
Q  155 ggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtga 242  Q
    |||| ||||||| ||| ||||| ||||||||  ||||||||||||||| ||| ||||||||||||||||| | || ||||||||||||    
T  23753133 ggagtgggagcgggattctagt-tggatcatcgtagtgatgtgggtgaatcacacttgagggggagattgat-ggaaatcaagtgtga 23753048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 5981530 - 5981444
Alignment:
Q  12 ccatgtacctgatgccttaagattttgggtaagagtatagtgtccaagtcttttattggtccaggacgtttaacccattgtcgctcc 98  Q
    ||||||||||||||||||||| ||||||||   | | | ||||| |||||| |||||||| | ||||||||| ||||||||| ||||    
T  5981530 ccatgtacctgatgccttaaggttttgggtggaaatgtggtgtctaagtctcttattggttctggacgtttagcccattgtcactcc 5981444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 5981894 - 5981850
Alignment:
Q  230 taatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||||||||||| |||||||||||||||| | |||||||||||    
T  5981894 taatcaagtgtgagggattatgtcccacatcaattaggaatggag 5981850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 14028404 - 14028491
Alignment:
Q  21 tgatgccttaagattttgggtaagagtatagtgtccaagtcttttattggtccaggacgtttaacccattgtcgctcccgggctcccc 108  Q
    ||||||||||| ||||||| ||||| |  ||||||||||||| ||  || |||  || |||||| |||||||| ||||||||||||||    
T  14028404 tgatgccttaaaattttggataagaatgcagtgtccaagtctcttcatgatcctagatgtttaatccattgtcactcccgggctcccc 14028491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 3671291 - 3671262
Alignment:
Q  241 gagtgattatgtcccacatcgactaggaat 270  Q
    ||||||||||||||||||||||||||||||    
T  3671291 gagtgattatgtcccacatcgactaggaat 3671262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 100 - 274
Target Start/End: Complemental strand, 40196111 - 40195937
Alignment:
Q  100 gggctccccagactcctccaacaactggtatcagagccctgattaggcttggtgggg-agcgggagcgagatcctagtgtggatcatgctagtgatgtgg 198  Q
    ||||||||| | |||| |||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||    
T  40196111 gggctccccggtctcc-ccaacaactggtatcagagctctggttaggcttggtggggtagcgggagcgggatcctagtgtggatcaggctagtgatgtgg 40196013  T
Q  199 gtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||    
T  40196012 gtgactcacacttgagggggagattgttgggaaatcaagtgtgagtgattatgtttcacatcgactaggaatggag 40195937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 100 - 274
Target Start/End: Complemental strand, 17732192 - 17732021
Alignment:
Q  100 gggctccccagactcctccaacaactggtatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtggg 199  Q
    |||||||||| ||||| ||||||  ||||||||||||| || |||||||  |||||||||||||||| ||||||||| ||||||| |||||||||||||     
T  17732192 gggctccccaaactcc-ccaacag-tggtatcagagccgtggttaggctcagtggggagcgggagcgggatcctagt-tggatcaggctagtgatgtgga 17732096  T
Q  200 tgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17732095 tgattcacacttgagtgggaggttgttggataatcaagtgtgagtgattatgtcccacatcgactaggaatggag 17732021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 100 - 274
Target Start/End: Complemental strand, 19033423 - 19033252
Alignment:
Q  100 gggctccccagactcctccaacaactggtatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtggg 199  Q
    |||||||||| ||||| ||||||  ||||||||||||| || |||||||  |||||||||||||||| ||||||||| ||||||| |||||||||||||     
T  19033423 gggctccccaaactcc-ccaacag-tggtatcagagccgtggttaggctcagtggggagcgggagcgggatcctagt-tggatcaggctagtgatgtgga 19033327  T
Q  200 tgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19033326 tgattcacacttgagtgggaggttgttggataatcaagtgtgagtgattatgtcccacatcgactaggaatggag 19033252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 54017783 - 54017666
Alignment:
Q  156 gagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtccc 255  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  54017783 gagcgggagcgggaccctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattgttgggtaatcaagtgtgagtgattatgtctc 54017684  T
Q  256 acatcgactaggaatgga 273  Q
    ||||||||||||||||||    
T  54017683 acatcgactaggaatgga 54017666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 124 - 274
Target Start/End: Original strand, 23162077 - 23162226
Alignment:
Q  124 ctggtatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagatt 223  Q
    ||||||| ||||||||| ||||||| ||| ||||||||||||||||| ||||||||||||| |||||| |||||||||| ||| ||||||||||| ||||    
T  23162077 ctggtattagagccctggttaggctcggttgggagcgggagcgagattctagtgtggatcaggctagtaatgtgggtgactcacacttgaggggg-gatt 23162175  T
Q  224 gttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    | || | ||| |||||||||||||||||||||||||||| |||||||||||    
T  23162176 ggtgagaaataaagtgtgagtgattatgtcccacatcgattaggaatggag 23162226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 169 - 274
Target Start/End: Complemental strand, 43978796 - 43978692
Alignment:
Q  169 atcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactagga 268  Q
    ||||||||||||||||  |||||||||||| ||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  43978796 atcctagtgtggatcaaactagtgatgtgg-tgattcacacttgagggggagattgttggaaaatcaagtgtgagtgattatgtcccacatcgactagga 43978698  T
Q  269 atggag 274  Q
    ||||||    
T  43978697 atggag 43978692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 16869744 - 16869633
Alignment:
Q  160 gggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgtt-gggtaatcaagtgtgagtgattatgtcccaca 258  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||      
T  16869744 gggagcaagatcctagtgtggatcatgctagtgatgtgggtgattcacacttgaggaggagaatgttagggtaatcaagtgtgagtgattatgtcccatg 16869645  T
Q  259 tcgactaggaat 270  Q
    |||| |||||||    
T  16869644 tcgattaggaat 16869633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 16143327 - 16143479
Alignment:
Q  123 actggtatcagagccctgattaggcttggtgg---ggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgaggggga 219  Q
    ||||||||||||||| || ||||||||| |||   |||| ||||||| ||| |||||||||||||| |||||||||||||||| ||| ||||||||||||    
T  16143327 actggtatcagagcc-tggttaggcttgctggacgggagtgggagcgggattctagtgtggatcatcctagtgatgtgggtgagtcacacttgaggggga 16143425  T
Q  220 gattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||| || ||||||||||||||||| |||| |||||||  |||| |||||||    
T  16143426 gattgtt-ggaaatcaagtgtgagtgataatgttccacatctgctagaaatggag 16143479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 32200973 - 32201071
Alignment:
Q  166 gagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgacta 265  Q
    ||||||||| ||| ||||||||||||||||||||||| |||  ||| ||||||||||||||||| |||||| |||||||||||||||| |||||||||||    
T  32200973 gagatcctaatgtagatcatgctagtgatgtgggtgagtcacgcttaagggggagattgttggg-aatcaaatgtgagtgattatgtctcacatcgacta 32201071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 16871127 - 16871076
Alignment:
Q  223 tgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  16871127 tgttgggtaatcaagtgtgagtgattatgtcccacatcgatttggaatggag 16871076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 43979036 - 43978986
Alignment:
Q  224 gttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||| |||||| |||||||||||||||||||||||||||| ||||||||    
T  43979036 gttgggaaatcaaatgtgagtgattatgtcccacatcgactaagaatggag 43978986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 43481588 - 43481629
Alignment:
Q  233 tcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  43481588 tcaagtgtgagtgattatgtctcacatcgactaggaatggag 43481629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 32201211 - 32201317
Alignment:
Q  122 aactggtatcagagccctgattaggcttggtgggg--agcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgaggggga 219  Q
    ||||||||||||||||||| || ||||   | |||  || ||||||| ||||||||||| | ||   |||||||||||||||| ||| ||||||||||||    
T  32201211 aactggtatcagagccctggttgggctccattggggaagtgggagcgggatcctagtgtaggtccaactagtgatgtgggtgagtcacacttgaggggga 32201310  T
Q  220 gattgtt 226  Q
    |||||||    
T  32201311 gattgtt 32201317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 51677524 - 51677599
Alignment:
Q  137 cctgattaggcttggtgggg-agcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatactt 211  Q
    |||||||||||| ||||||| ||||||||||||| | ||||||||  || ||||||||||| |||||| |||||||    
T  51677524 cctgattaggctcggtgggggagcgggagcgagaacttagtgtgggccaggctagtgatgtcggtgatccatactt 51677599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 23162509 - 23162467
Alignment:
Q  231 aatcaagtgtgagtgattatgtcccacatcgactaggaatgga 273  Q
    |||||||||||||||||||||||||| ||||| || |||||||    
T  23162509 aatcaagtgtgagtgattatgtcccatatcgattatgaatgga 23162467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 23161832 - 23161876
Alignment:
Q  225 ttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaat 270  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||    
T  23161832 ttgggaaatcaagtgtgagtgattatgt-ccacatcgactaagaat 23161876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 23162368 - 23162308
Alignment:
Q  76 gacgtttaacccattgtcgctcccgg-gctccccagactcctccaacaactggtatcagagc 136  Q
    ||||||||  |||||| ||||||||| ||||||| |||||| ||||||||||||||||||||    
T  23162368 gacgtttagtccattgccgctcccggagctccccggactcc-ccaacaactggtatcagagc 23162308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 125 - 274
Target Start/End: Original strand, 14168826 - 14168975
Alignment:
Q  125 tggtatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattg 224  Q
    ||||||||||||| || |||||||| ||||||||||||| |  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14168826 tggtatcagagccgtggttaggcttagtggggagcgggaacaggattctagtgtggatcatgctagtgatgtggatgattcatacttgagggggagattg 14168925  T
Q  225 ttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||| ||||||||||| || ||||||||||||||||||||||||||||||    
T  14168926 ttggataatcaagtgtaagggattatgtcccacatcgactaggaatggag 14168975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 125 - 274
Target Start/End: Original strand, 41341348 - 41341496
Alignment:
Q  125 tggtatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattg 224  Q
    |||||| |||||| || |||||||  |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||     
T  41341348 tggtattagagccgtggttaggctcagtggggagcgagagcgggatcctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagatta 41341447  T
Q  225 ttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41341448 ttgggtaatcaagtgtgagtgattatgtcccacat-gactaggaatggag 41341496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 13112839 - 13113025
Alignment:
Q  80 tttaacccattgtcgctcccgg-gctccccagactcctccaacaa-ctggtatcagagccctgattaggcttggtgggga-gcgggagcgagatcctagt 176  Q
    |||| |||||||||||| || | |||||||||||||| ||||||| |||||||||||||| |  ||||||||| |||||| | | ||||| ||||| |||    
T  13112839 tttagcccattgtcgcttccagcgctccccagactcccccaacaaactggtatcagagccttc-ttaggcttgctggggaagtgagagcgggatcccagt 13112937  T
Q  177 gtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactag 266  Q
     |||||| |  ||||||| || |||| ||| ||||||||||||||||||| || ||||||| ||||||||| || |||||||||||||||    
T  13112938 -tggatcttcttagtgatatgagtgagtcacacttgagggggagattgtt-ggaaatcaagagtgagtgataatctcccacatcgactag 13113025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 41340271 - 41340320
Alignment:
Q  225 ttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41340271 ttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 41340320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 3294984 - 3294933
Alignment:
Q  223 tgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3294984 tgttgggtaatcaagtgtgagtgattatgtcccatatcgactaggaatggag 3294933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 5963673 - 5963724
Alignment:
Q  223 tgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5963673 tgttgggtaatcaagtgtgtgtgattatgtcccacatcgactaggaatggag 5963724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 274
Target Start/End: Complemental strand, 36389241 - 36389111
Alignment:
Q  141 attaggcttggtgggg-agcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtg 239  Q
    |||||||||| ||||| || |||||||  |||||||| |||||| | ||||||||||||| |  ||| ||||||||||||| |||||||| |||||||||    
T  36389241 attaggcttgctgggggagtgggagcggaatcctagt-tggatcgtcctagtgatgtgggag--tcaaacttgagggggagtttgttggg-aatcaagtg 36389146  T
Q  240 tgagtgattatgtcccacatcgactaggaatggag 274  Q
     ||||||| |||||||||||| ||||| |||||||    
T  36389145 cgagtgataatgtcccacatcaactagaaatggag 36389111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 102 - 266
Target Start/End: Original strand, 13042866 - 13043029
Alignment:
Q  102 gctccccagactcctccaacaa-ctggtatcagagccctgattaggcttggtgggga-gcgggagcgagatcctagtgtggatcatgctagtgatgtggg 199  Q
    |||||||||||||| ||||||| |||||||||||||| |  ||||||||| |||||| | | | ||| ||||| ||| |||||| |  ||||||| || |    
T  13042866 gctccccagactcccccaacaaactggtatcagagccttc-ttaggcttgctggggaagtgagtgcgggatcccagt-tggatcttcttagtgatatgag 13042963  T
Q  200 tgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactag 266  Q
    ||| ||| ||||||||||||||||||| || ||||||| ||||||||| || |||||||||||||||    
T  13042964 tgagtcacacttgagggggagattgtt-ggaaatcaagagtgagtgataatctcccacatcgactag 13043029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 13042672 - 13042753
Alignment:
Q  192 gatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||| ||| ||||||||||| || ||||||  |||||||||||||||||||||| ||||||| ||||| |||||||    
T  13042672 gatgtgggtgagtcacacttgagggggggactgttgga-aatcaagtgtgagtgattatgtgccacatcaactagaaatggag 13042753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 13112670 - 13112751
Alignment:
Q  192 gatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||| ||| ||||||||||| || ||||||  |||||||||||||||||||||| ||||||| ||||| |||||||    
T  13112670 gatgtgggtgagtcacacttgagggggggactgttgga-aatcaagtgtgagtgattatgtgccacatcaactagaaatggag 13112751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 5963761 - 5963856
Alignment:
Q  20 ctgatgccttaagattttgggtaagagtatagtgtccaagtcttttattggtccaggacgtttaacccattgtcgctccc-gggctccccagactcc 115  Q
    ||||||||||||| |||||||||||||| | ||||  |||||| ||| |||||| |||||||| |||||||| ||||||| ||||||||| ||||||    
T  5963761 ctgatgccttaaggttttgggtaagagtgtggtgtttaagtctctta-tggtcctggacgtttgacccattgccgctcccggggctccccggactcc 5963856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 34103543 - 34103595
Alignment:
Q  222 ttgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||    
T  34103543 ttgttggataatcaagtgtgagtgattatgttccacatcgaatagaaatggag 34103595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 13042495 - 13042572
Alignment:
Q  187 ctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactag 266  Q
    |||||||||||||||| ||| ||||||| ||| | |||||||  ||||||||||||||||| || |||||||||||||||    
T  13042495 ctagtgatgtgggtgagtcacacttgagaggggg-ttgttgga-aatcaagtgtgagtgataatatcccacatcgactag 13042572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 13112493 - 13112570
Alignment:
Q  187 ctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactag 266  Q
    |||||||||||| ||| ||| ||||||| ||| | |||||||  ||||||||||||||||| || |||||||||||||||    
T  13112493 ctagtgatgtggatgagtcacacttgagaggggg-ttgttgga-aatcaagtgtgagtgataatatcccacatcgactag 13112570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 125 - 268
Target Start/End: Original strand, 8802385 - 8802528
Alignment:
Q  125 tggtatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattg 224  Q
    ||||||||||||| || |||||||  |||||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||| |||||||||  ||||||    
T  8802385 tggtatcagagccatggttaggctcagtggggagcgggagcgggatcctagtatggatcaggctagtgatgtggctgattcacacttgagggaaagattg 8802484  T
Q  225 ttgggtaatcaagtgtgagtgattatgtcccacatcgactagga 268  Q
    |||||||||| ||||||||||||||||||||||||||| |||||    
T  8802485 ttgggtaatctagtgtgagtgattatgtcccacatcgattagga 8802528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 117 - 274
Target Start/End: Complemental strand, 11776331 - 11776181
Alignment:
Q  117 ccaacaactggtatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgaggg 216  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||      |||||| |||||||| ||||||||||||||||| |||||||||||||    
T  11776331 ccaacaactggtatcagaaccctggttaggctcggtggggagcggga------tcctagcgtggatcaggctagtgatgtgggtgactcatacttgaggg 11776238  T
Q  217 ggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||    
T  11776237 ggagattgttggg-attcaagtgtgaatgattatgtcccacatcaactaggaatggag 11776181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 266
Target Start/End: Complemental strand, 21416449 - 21416266
Alignment:
Q  83 aacccattgtcgctcccgg-gctccccagactcctccaacaact-ggtatcagagccctgattaggcttggtgggg-agcgggagcgagatcctagtgtg 179  Q
    ||||||||||||||||  | ||| |||||||||| ||||||| | ||||||||||||  | ||||||||| ||||| || ||||||| ||||||||||||    
T  21416449 aacccattgtcgctccaagcgcttcccagactcc-ccaacaaattggtatcagagcctag-ttaggcttgctgggggagtgggagcgggatcctagtgtg 21416352  T
Q  180 gatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactag 266  Q
    |||||| |||||||||||||||| ||| |||| ||||||| ||| || || |||||||||||||||||||||||||||||| |||||    
T  21416351 gatcatcctagtgatgtgggtgagtcacacttcagggggaaatttttagg-aatcaagtgtgagtgattatgtcccacatcaactag 21416266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 265
Target Start/End: Original strand, 27597830 - 27598017
Alignment:
Q  80 tttaacccattgtcgctcccgg-gctccccagactcctccaacaactggtatcagagccctgattaggcttggtgggg-agcgggagcgag--atcctag 175  Q
    |||||||||||||||||||  | |||||||||||||| | |  |||||||||||||||| |||||||||||| ||||| || ||||||| |  | |||||    
T  27597830 tttaacccattgtcgctccaagcgctccccagactccccaataaactggtatcagagcc-tgattaggcttgctgggggagtgggagcgggggaccctag 27597928  T
Q  176 tgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgacta 265  Q
    |||||||||| |||||||||||||||| ||| |||||| || ||||| ||| || ||||||||||||||||| ||||| |||||||||||    
T  27597929 tgtggatcatcctagtgatgtgggtgagtcacacttgaaggagagatcgtt-ggaaatcaagtgtgagtgataatgtctcacatcgacta 27598017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 23578234 - 23578121
Alignment:
Q  160 gggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacat 259  Q
    ||||||| |||||||| ||| |||| ||||||||| ||||| | ||| |||||||| ||||||||||||||  ||| ||||||||||||| |||||||||    
T  23578234 gggagcgggatcctagcgtgaatcaggctagtgatatgggtcactcaaacttgaggcggagattgttgggt-ttcatgtgtgagtgattaagtcccacat 23578136  T
Q  260 cgactaggaatggag 274  Q
    ||| ||| |||||||    
T  23578135 cgagtagaaatggag 23578121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 48071376 - 48071427
Alignment:
Q  223 tgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48071376 tgttgggtaatcaagtgtcagtgattatgtcccacatcgactaggaatggag 48071427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 2463096 - 2463190
Alignment:
Q  172 ctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactag 266  Q
    |||| |||||||| | ||||||||||||||| ||| |||| ||| | ||||||||||  ||| ||||||||||||||||||| ||||||||||||    
T  2463096 ctagcgtggatcaggttagtgatgtgggtgactcacactttaggagaagattgttggaaaattaagtgtgagtgattatgtctcacatcgactag 2463190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 11776505 - 11776464
Alignment:
Q  233 tcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  11776505 tcaagtgtgagtgattatgtcccacatcaactaggaatggag 11776464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 27391937 - 27391886
Alignment:
Q  222 ttgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  27391937 ttgttggataatcaagtgtgagtgattatgtcccacatc-aataggaatggag 27391886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 23569000 - 23568901
Alignment:
Q  102 gctccccagactcctccaacaa-ctggtatcagagccctgattaggcttggt--ggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgg 198  Q
    |||||||||||||| ||||||| ||||||||| |||| || |||||||| |   |||||| ||||||  |||||||||||||||||| ||||||||||||    
T  23569000 gctccccagactcc-ccaacaaactggtatcatagcc-tggttaggctttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgg 23568903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 35589698 - 35589601
Alignment:
Q  122 aactggtatcagagccctgattaggcttggtgggg-agcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgaggggg 218  Q
    |||||||||||||||||| |||||| ||| ||||| ||| | || | |||  | |||||||| | ||||||||||||||||| ||| |||||||||||    
T  35589698 aactggtatcagagcccttattaggtttgatgggggagcagaagtgggatattggtgtggattaggctagtgatgtgggtgactcacacttgaggggg 35589601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 27938700 - 27938751
Alignment:
Q  153 ggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgatt 204  Q
    |||||||||| | |||||| |||||||||||| |||||||||||||| ||||    
T  27938700 ggggagcgggggtgagatcttagtgtggatcaggctagtgatgtgggagatt 27938751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 45100184 - 45100221
Alignment:
Q  233 tcaagtgtgagtgattatgtcccacatcgactaggaat 270  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  45100184 tcaagtgtgagtgattatgttccacattgactaggaat 45100221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 77 - 273
Target Start/End: Original strand, 43834339 - 43834535
Alignment:
Q  77 acgtttaacccattgtcgctcccgg-gctccccagactcctccaacaactggtatcagagccctgattaggcttggtgggg-agcgggagcgagatccta 174  Q
    ||||||| || |||||||||||||| |||||||  ||||| |||||||||||||||||| ||||| ||||||  | ||||| ||||| || | |||||||    
T  43834339 acgtttagccaattgtcgctcccggcgctcccctaactcc-ccaacaactggtatcagaaccctggttaggcccgatgggggagcggaagtgggatccta 43834437  T
Q  175 gtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatgga 273  Q
    |||||||||| |||||||||||| |||| ||| |||||||| ||||||||||||||  |||||||||||||||||| || ||||||| ||| |||||||    
T  43834438 gtgtggatcaggctagtgatgtgagtgactcacacttgaggtggagattgttgggt-ttcaagtgtgagtgattatatctcacatcggctaagaatgga 43834535  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 125 - 274
Target Start/End: Complemental strand, 31973601 - 31973452
Alignment:
Q  125 tggtatcagagccctgattaggcttggtgg-ggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagatt 223  Q
    |||||||| |||| || ||||||| | ||| |||| ||||||| |||||||||||||||||  ||||||||||| |||| ||| ||||||||||||||||    
T  31973601 tggtatcaaagccttggttaggctcgatggaggagtgggagcgggatcctagtgtggatcagactagtgatgtgagtgagtcacacttgagggggagatt 31973502  T
Q  224 gttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||| || ||||||||||||||||||||||| |||| ||||||| |||||||    
T  31973501 gtt-ggaaatcaagtgtgagtgattatgtctcacaccgactagaaatggag 31973452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 274
Target Start/End: Complemental strand, 4392176 - 4392027
Alignment:
Q  117 ccaacaactggtatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgaggg 216  Q
    |||||||||| | ||||||||| | ||||||| |||||||||| ||||   ||||||||||||||||| |||||||||||||||        ||||||||    
T  4392176 ccaacaactgatgtcagagcccgggttaggctcggtggggagcaggagttggatcctagtgtggatcaggctagtgatgtgggt--------cttgaggg 4392085  T
Q  217 ggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
      ||||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||    
T  4392084 aaagattgttgggaaatcaactgtaagtgattatgtcccacatcgagtaggaatggag 4392027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 266
Target Start/End: Complemental strand, 34666078 - 34665934
Alignment:
Q  122 aactggtatcagagccctgattaggcttggtggggagc-gggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggag 220  Q
    |||||||||||||| |||| ||||||| | ||||| |  ||||||| |||||||||||||||||  ||||||||||| || | ||| ||||||||| |||    
T  34666078 aactggtatcagagtcctggttaggctcgctggggtggtgggagcgggatcctagtgtggatcacactagtgatgtgagtaaatcacacttgagggagag 34665979  T
Q  221 attgttgggtaatcaagtgtgagtgattatgtcccacatcgactag 266  Q
    |||||| || ||||| |||||||||||||| |||||||||||||||    
T  34665978 attgtt-ggaaatcatgtgtgagtgattatatcccacatcgactag 34665934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 5821883 - 5821982
Alignment:
Q  102 gctccccagactcctccaacaactggtatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtg 201  Q
    ||||||| ||||| |||||||||||||||||||||||||||||  ||  |||||| ||||||||| ||||||  | ||||||| ||||||||||||||||    
T  5821883 gctccccggactc-tccaacaactggtatcagagccctgattaaactcagtggggggcgggagcgggatccttatttggatcaggctagtgatgtgggtg 5821981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 25294959 - 25294904
Alignment:
Q  219 agattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  25294959 agattgttgggtaatcaagtgtgagtgattatgtcccacattggctaggaatggag 25294904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 15327846 - 15327897
Alignment:
Q  223 tgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  15327846 tgttgggaaatcaagtgtgagtgattatgtctcacatcgactaggaatggag 15327897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 4392360 - 4392309
Alignment:
Q  223 tgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  4392360 tgttgggaaatcaagtgtgagtgattatgtctcacatcgactatgaatggag 4392309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 4753198 - 4753112
Alignment:
Q  117 ccaacaactggtatcagagccctgattaggcttggtggg-gagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtga 202  Q
    ||||||||||||||||| | ||||||||||||  ||||| || |||||| | ||||||||| |||||||||||| ||||| ||||||    
T  4753198 ccaacaactggtatcagggtcctgattaggctcagtgggagatcgggagtgggatcctagtatggatcatgctaatgatgcgggtga 4753112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 27686680 - 27686641
Alignment:
Q  235 aagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  27686680 aagtgtgagtgattatgttccacatcgactaggaatggag 27686641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 25294997 - 25294960
Alignment:
Q  225 ttgggtaatcaagtgtgagtgattatgtcccacatcga 262  Q
    |||||||||||| |||||||||||||||||||||||||    
T  25294997 ttgggtaatcaattgtgagtgattatgtcccacatcga 25294960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 5821990 - 5822089
Alignment:
Q  128 tatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttg 227  Q
    |||||||||| || ||||||||||||||| ||||||| | |||||| |||| |||||   | |||||||||  || ||| |||| ||| |||||||||||    
T  5821990 tatcagagccttggttaggcttggtggggggcgggagtgggatccttgtgtagatcagattggtgatgtggacgactcacacttaaggtggagattgttg 5822089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 12466281 - 12466324
Alignment:
Q  231 aatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||    
T  12466281 aatcaagtgtaagtgattatgtcccacatcaactagaaatggag 12466324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 47159204 - 47159144
Alignment:
Q  168 gatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgg 228  Q
    |||||||||||||||||| |||||||||||| ||| ||| |||| |  || ||||||||||    
T  47159204 gatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattgttgg 47159144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 274
Target Start/End: Complemental strand, 7301649 - 7301417
Alignment:
Q  34 ttttgggtaagagtatagtgtccaagtcttttattggtccaggacgtttaacccattgtcgctcccgggctccccagactcctccaacaa-ctggtatca 132  Q
    |||||||||||||| | ||||| |||||| ||| ||||||  || ||||| |||||||||||||||        || ||||| ||||||| || ||||||    
T  7301649 ttttgggtaagagtttggtgtctaagtctcttagtggtcctagaggtttagcccattgtcgctccc--------caaactcc-ccaacaaactagtatca 7301559  T
Q  133 gagccctgattaggcttggtgggg-agcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggta 231  Q
    ||||| || ||||||| | ||||| || ||||||| ||||||| ||||||||| ||||||||||||||||| ||| | |||||| ||| |||||| |  |    
T  7301558 gagccatggttaggctcgatgggggagtgggagcgggatcctaatgtggatcaggctagtgatgtgggtgagtcacagttgaggaggatattgtt-gaaa 7301460  T
Q  232 atcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    || |||||||||||||||||||||||||||||||| |||||||    
T  7301459 attaagtgtgagtgattatgtcccacatcgactagaaatggag 7301417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 266
Target Start/End: Complemental strand, 11638038 - 11637846
Alignment:
Q  76 gacgtttaacccattgtcgctccc--gggctccccagactcctccaacaactggtatcagagccctgattaggcttggtgggg--agcgggagcgagatc 171  Q
    |||||||||||||||  |||||||  | |||||| ||||||| | |  ||| |||||||||||| |||||||||||| |||||  || | ||| | ||||    
T  11638038 gacgtttaacccattaccgctcccaagcgctcccaagactccccaagaaacaggtatcagagcc-tgattaggcttgttggggggagtgagagtgggatc 11637940  T
Q  172 ctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactag 266  Q
    ||  |||||||||| ||||| |||||| ||| ||| |||||||||| |||||||||   ||||||||||||||||| |||||| |||||||||||    
T  11637939 cttatgtggatcattctagtcatgtggttgagtcacacttgaggggaagattgttgaa-aatcaagtgtgagtgataatgtccaacatcgactag 11637846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 21130225 - 21130174
Alignment:
Q  223 tgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21130225 tgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 21130174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 15092224 - 15092346
Alignment:
Q  107 ccagactcctccaacaactggtatcagagccctgatta-ggcttggtg-gggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgatt 204  Q
    ||||||||| ||||||||||||||||||||| || ||| |||| |||  ||||||||||| | |||||||||||||||||  ||||| |||| ||||| |    
T  15092224 ccagactcc-ccaacaactggtatcagagccatggttaaggctcggtacgggagcgggagtgggatcctagtgtggatcagactagtaatgttggtgact 15092322  T
Q  205 catacttgagggggagattgttgg 228  Q
    || |||||||||| ||||||||||    
T  15092323 cacacttgaggggaagattgttgg 15092346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 22605421 - 22605372
Alignment:
Q  225 ttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22605421 ttgggtaatcaagtgtgagtgattatgttccacatcgactaggaatggag 22605372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 22605241 - 22605163
Alignment:
Q  125 tggtatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgatt 204  Q
    |||||||| |||| || |||||||  |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  22605241 tggtatcaaagccgtggttaggctcagtggggagcgggagcgggatcctagtgt-gatcaggctagtgatgtgggtgatt 22605163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 21297293 - 21297251
Alignment:
Q  231 aatcaagtgtgagtgattatgtcccacatcgactaggaatgga 273  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  21297293 aatcaagtgtgagtgattgtgtcccacatcgactaggaatgga 21297251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 21118698 - 21118644
Alignment:
Q  152 tggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattca 206  Q
    ||||||||||||||| |||| |||||||| ||| ||| |||||||||||||||||    
T  21118698 tggggagcgggagcgggatcatagtgtggctcaggcttgtgatgtgggtgattca 21118644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 262
Target Start/End: Original strand, 6250082 - 6250113
Alignment:
Q  231 aatcaagtgtgagtgattatgtcccacatcga 262  Q
    ||||||||||||||||||||||||||||||||    
T  6250082 aatcaagtgtgagtgattatgtcccacatcga 6250113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 7301744 - 7301701
Alignment:
Q  231 aatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||||||||||| ||||||||||||||||||||  |||||||    
T  7301744 aatcaagtgtgagtaattatgtcccacatcgactaaaaatggag 7301701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 28940980 - 28940923
Alignment:
Q  169 atcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgtt 226  Q
    ||||||||||| |||| |||||| |||||||| | |||||||||| |||| |||||||    
T  28940980 atcctagtgtgaatcaggctagtaatgtgggtaactcatacttgacggggggattgtt 28940923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 22605173 - 22605137
Alignment:
Q  238 tgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  22605173 tgtgggtgattatgtcccacatcgactaggaacggag 22605137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 274
Target Start/End: Original strand, 40053340 - 40053495
Alignment:
Q  120 acaactggtatcagagccctgattaggcttggtggggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgaggggga 219  Q
    |||| ||||||||||||||| |||||||| | |||||||||| || | ||||||||  ||||||| ||||||||||||||||| ||| |||||||||||     
T  40053340 acaattggtatcagagccctcattaggctcgatggggagcggaagtgggatcctagcctggatcaggctagtgatgtgggtgactcacacttgagggggg 40053439  T
Q  220 g--attgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |  ||||||||| |||||||||||| | |||||||||||||||| |||  |||||||    
T  40053440 gctattgttggg-aatcaagtgtgaataattatgtcccacatcggctaaaaatggag 40053495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 19548086 - 19548177
Alignment:
Q  173 tagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactag 266  Q
    |||| ||||||| ||||||||||||||||| ||| |||||||| || |||||||||||  ||||| ||||||| ||||||||||||||||||||    
T  19548086 tagtttggatcaggctagtgatgtgggtgactcacacttgaggagg-gattgttgggt-ttcaagcgtgagtggttatgtcccacatcgactag 19548177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 44981985 - 44981880
Alignment:
Q  168 gatcctagtgtggatcatg-ctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactag 266  Q
    ||||||||||||||||| | |||||||||||||||| ||| |||||||||||| |||| | || | ||||||||||||| ||| ||||| ||||||||||    
T  44981985 gatcctagtgtggatcaaggctagtgatgtgggtgactcacacttgagggggaaattgct-ggaattcaagtgtgagtggtta-gtcccgcatcgactag 44981888  T
Q  267 gaatggag 274  Q
     |||||||    
T  44981887 aaatggag 44981880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 11727881 - 11727763
Alignment:
Q  155 ggagcgggagcgagatcctagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcc 254  Q
    ||||| |||| | |||||||||||||||||  |||||||||||||||| ||| ||| ||| |||||||| || |  ||| |||||||||| ||||||| |    
T  11727881 ggagcaggagtgggatcctagtgtggatcagactagtgatgtgggtgactcacactcgagagggagattatt-gaaaattaagtgtgagtaattatgttc 11727783  T
Q  255 cacatcgactaggaatggag 274  Q
     |||| |||||| |||||||    
T  11727782 tacattgactagaaatggag 11727763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 13792654 - 13792611
Alignment:
Q  231 aatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    |||||||||||||||||||||||||||||| ||||| |||||||    
T  13792654 aatcaagtgtgagtgattatgtcccacatcaactagaaatggag 13792611  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 272
Target Start/End: Original strand, 28226527 - 28226694
Alignment:
Q  102 gctccccagactcctccaacaa-ctggtatcagagccctgattaggcttggtggg-gagcgggagcgagatcctagtgtggatcatgctagtgatgtggg 199  Q
    |||||||| ||||| ||||||| ||||||||||||||  | |||| |||| |||| ||| ||||||| ||||||||| || ||||  ||||||||| ||     
T  28226527 gctccccaaactcc-ccaacaaactggtatcagagcctag-ttagacttgctgggagagtgggagcgggatcctagt-tgaatcaacctagtgatgagg- 28226622  T
Q  200 tgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatgg 272  Q
    ||| |||  |||||||||||||||||| || |||||||||||| |||| || || ||||||||| || |||||    
T  28226623 tgagtcacgcttgagggggagattgtt-ggaaatcaagtgtgactgataatatcacacatcgacaagaaatgg 28226694  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 39334369 - 39334277
Alignment:
Q  111 actcctccaacaactggtatcagagccctgattaggcttggtgggga-gcgggagcgagatcctagtgtggatcatgctagtgatgtgggtga 202  Q
    ||||| ||||||| |||||||| |||| || ||||||| |||||||| || |||  |  |||||||||||||||| | |||||||||||||||    
T  39334369 actcccccaacaagtggtatcaaagccatggttaggctcggtggggaagcaggaaaggtatcctagtgtggatcaagttagtgatgtgggtga 39334277  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 28226335 - 28226378
Alignment:
Q  231 aatcaagtgtgagtgattatgtcccacatcgactaggaatggag 274  Q
    ||||||||||||||| | |||||||||||||||||| |||||||    
T  28226335 aatcaagtgtgagtgttaatgtcccacatcgactagaaatggag 28226378  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 266
Target Start/End: Complemental strand, 30220041 - 30220006
Alignment:
Q  231 aatcaagtgtgagtgattatgtcccacatcgactag 266  Q
    ||||||||||||| ||||||||||||||||||||||    
T  30220041 aatcaagtgtgagcgattatgtcccacatcgactag 30220006  T

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Target: scaffold0548 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 274
Target Start/End: Complemental strand, 4286 - 4186
Alignment:
Q  173 tagtgtggatcatgctagtgatgtgggtgattcatacttgagggggagattgttgggtaatcaagtgtgagtgattatgtcccacatcgactaggaatgg 272  Q
    |||||||||||| ||||||||||||| ||| ||| | |||||||| |||||| |  | ||| |||||||||||||| |||| |||||||||||  |||||    
T  4286 tagtgtggatcaagctagtgatgtggatgactcacatttgaggggaagattg-tcagaaattaagtgtgagtgattgtgtctcacatcgactataaatgg 4188  T
Q  273 ag 274  Q
    ||    
T  4187 ag 4186  T

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Target: scaffold0548; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 4080 - 3964
Alignment:
Q  88 attgtcgctcccgg-gctccccagactcctccaaca-actggtatcagagccctgattaggcttggtgggga-gcgggagcgagatcctagtgtggatca 184  Q
    |||||||||||| | |||||| ||||||| |||||| |||||||||| ||||||| || |||||| |||||  ||||||| | | |||||||||||||||    
T  4080 attgtcgctcccagtgctccctagactcc-ccaacatactggtatcatagccctggttgggcttgatgggggtgcgggagtgggttcctagtgtggatca 3982  T
Q  185 tgctagtgatgtgggtga 202  Q
     | |||||||||| ||||    
T  3981 agatagtgatgtgtgtga 3964  T

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