View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14137_low_1 (Length: 673)
Name: NF14137_low_1
Description: NF14137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14137_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 6 - 516
Target Start/End: Complemental strand, 5129737 - 5129235
Alignment:
| Q |
6 |
actgaaatgaagcaacttccatacaataggtagggttatgaaagttcttgttttaggatgcaaatgatgtcttttctttttattgtaaaatttaatctct |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| |
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| T |
5129737 |
actgaaatgaagcaacttccatacaataggtagggttatgaaagttcttgttttaggatgaaaatgatgtcttttcttttt-ttgtaaactttaatctct |
5129639 |
T |
|
| Q |
106 |
gttcattagtcattatctatggttttcggagaatgacttgctaccttgttaccttcattaggaaaaacaagacagttctttatcattcagtttcctgatg |
205 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| || | | || | ||||| ||||||||||||||||||||| |
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| T |
5129638 |
gttcattagtcattatctatggttttcagagaatgacttgctaccttgttgccg--agtgcttaatgct---cagtt--ttatcattcagtttcctgatg |
5129546 |
T |
|
| Q |
206 |
tcttatatatgcttttcttcatctatcttgtcttcttagtctttatctgctccttgaaaagggtttctgaatcctgagtctgaaatataaccacttattt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
5129545 |
tcttatatatgcttttcttcatctatcttgtcttcttagtctttatctgctccttgaaaagcgtttttgaatcctgagtctgaaatataaccacttattt |
5129446 |
T |
|
| Q |
306 |
gaggagctttgatcaaattgattgattagatttaaacaatttcaattttttgcatgatgttgcttgagatgtcagatgatattataagcatcgtgtaaca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
5129445 |
gaggagctttgatcaaattgattgattagatttaaacaatttcaattttttgcatgatgttgcttgagatgtaagatgatattataagcatcgtgtcaca |
5129346 |
T |
|
| Q |
406 |
acatacaaaataaagaatttaaggaaagcatgcttgaaaacacgaacactacatttatgaattactgtcttatcatttgtcagtnnnnnnngttggttgc |
505 |
Q |
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| T |
5129345 |
acatacaaaataaagaatttaaggaaagcatgcttgaaaacacaaacactacatttatgaattactgtcttatcatttgtcagtaaaaaaagttggttgc |
5129246 |
T |
|
| Q |
506 |
aattatagtaa |
516 |
Q |
| |
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||||||||||| |
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| T |
5129245 |
aattatagtaa |
5129235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 508 - 658
Target Start/End: Complemental strand, 5128535 - 5128383
Alignment:
| Q |
508 |
ttatagtaaaatacatgtataagttatagtagtggnnnnnnnn--actcaattaattagagtagttgaaagtagattgtggaattcaaattttgtttttg |
605 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5128535 |
ttatagtaaaatacatgtataagttatagtagtggttttttttttactcaattaattagagtagttgaaagtagattgtggaattcaaattttgtttttg |
5128436 |
T |
|
| Q |
606 |
tcttaaacttctggtttccaacggggtaatttgaagttcggttaggtggtaaa |
658 |
Q |
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| T |
5128435 |
tcttaaacttctggtttccaacggggtaatttgaagttcggttaggtggtaaa |
5128383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 1601534 - 1601575
Alignment:
| Q |
238 |
ttcttagtctttatctgctccttgaaaagggtttctgaatcc |
279 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1601534 |
ttcttagtctttaactgctccttgaaaagggtttctgaatcc |
1601575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 8527534 - 8527497
Alignment:
| Q |
242 |
tagtctttatctgctccttgaaaagggtttctgaatcc |
279 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||| |
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| T |
8527534 |
tagtcattaactgctccttgaaaagggtttctgaatcc |
8527497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 8534125 - 8534088
Alignment:
| Q |
242 |
tagtctttatctgctccttgaaaagggtttctgaatcc |
279 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||| |
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| T |
8534125 |
tagtcattaactgctccttgaaaagggtttctgaatcc |
8534088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 48363166 - 48363207
Alignment:
| Q |
238 |
ttcttagtctttatctgctccttgaaaagggtttctgaatcc |
279 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||| |
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| T |
48363166 |
ttcttaatctttaactgctccttgaaaagggtttctgaatcc |
48363207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 9441868 - 9441831
Alignment:
| Q |
242 |
tagtctttatctgctccttgaaaagggtttctgaatcc |
279 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||| |
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| T |
9441868 |
tagtcattaactgctccttgaaaagggtttctgaatcc |
9441831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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