View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14137_low_3 (Length: 277)
Name: NF14137_low_3
Description: NF14137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14137_low_3 |
 | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 41972499 - 41972725
Alignment:
| Q |
11 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41972499 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaatccacaagagcggccaaatacaaagaggatgtaaacaacgt |
41972598 |
T |
|
| Q |
111 |
tagtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatcc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41972599 |
-agtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatcc |
41972697 |
T |
|
| Q |
211 |
attgccgtaactccacctatacattaat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41972698 |
attgccgtaactccacctatacattaat |
41972725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 1240866 - 1241097
Alignment:
| Q |
11 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240866 |
cagagagcatggtaagatgtcttccaaagattctagttgcggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
1240965 |
T |
|
| Q |
111 |
tagtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaaga----atgg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1240966 |
tagtgtctgactgtcgaatttgcagtattgattatcggtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatgg |
1241065 |
T |
|
| Q |
207 |
atccattgccgtaactccacctatacattaat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1241066 |
atccattgccgtaactccacctatacattaat |
1241097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 42519087 - 42519314
Alignment:
| Q |
11 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42519087 |
cagagagcatggtaagacgtcttccaaagattctagttacagtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagt |
42519186 |
T |
|
| Q |
111 |
tagtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
42519187 |
tagtgtctgactgtcgaatttgcagtattgattatctgcaggcttaatgtttagctgcttagcataaacatctggaaagaacttcattaagaatggatcc |
42519286 |
T |
|
| Q |
211 |
attgccgtaactccacctatacattaat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
42519287 |
attgccgtaactccacctatacattaat |
42519314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 42550991 - 42550872
Alignment:
| Q |
18 |
catggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgttagtgtc |
117 |
Q |
| |
|
|||||| ||||| |||||||| || |||||| |||||||| ||||| || || |||||||| ||||||||||||||||| |||||||| |||| || |
|
|
| T |
42550991 |
catggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgtt |
42550892 |
T |
|
| Q |
118 |
tgactgtcgaatttgcagta |
137 |
Q |
| |
|
|| || |||||| ||||||| |
|
|
| T |
42550891 |
tggctatcgaatctgcagta |
42550872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 1 - 33
Alignment:
| Q |
206 |
gatccattgccgtaactccacctatacattaat |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
gatccattgccgtaactccacctatacattaat |
33 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University