View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14137_low_4 (Length: 244)
Name: NF14137_low_4
Description: NF14137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14137_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 41419672 - 41419513
Alignment:
| Q |
8 |
tgagaagaacactaaaccttgttggcatagtaatttgaggttaaaccttaaaacaagaaggtttgatgatattgtaatgtcacctcattcttcatttccc |
107 |
Q |
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| T |
41419672 |
tgagaagaacactaaaccttgttggcatagtaatttgaggttaagccttaaaacaagaaggtttgatgatattgtaatgtcacctcattctccatttcct |
41419573 |
T |
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| Q |
108 |
cagtcacctcttgttaaagccactacttgaattatttagcatatagaaaaagtaataact |
167 |
Q |
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| T |
41419572 |
cagtcacctcttgttaaagccactacttgaattatttagcatatagaagaagtaataact |
41419513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 41419541 - 41419509
Alignment:
| Q |
177 |
ttatttagcatatagaagaagtaataactgata |
209 |
Q |
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| T |
41419541 |
ttatttagcatatagaagaagtaataactgata |
41419509 |
T |
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