View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14138_high_12 (Length: 468)

Name: NF14138_high_12
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14138_high_12
NF14138_high_12
[»] chr6 (7 HSPs)
chr6 (142-349)||(637557-637766)
chr6 (374-446)||(8150412-8150484)
chr6 (57-97)||(636998-637038)
chr6 (377-422)||(4132602-4132647)
chr6 (391-441)||(16497835-16497887)
chr6 (404-441)||(16517303-16517340)
chr6 (374-430)||(19816178-19816234)
[»] chr4 (3 HSPs)
chr4 (378-447)||(29657711-29657780)
chr4 (244-349)||(30254883-30254988)
chr4 (374-446)||(55005828-55005900)
[»] chr7 (2 HSPs)
chr7 (374-439)||(21496192-21496257)
chr7 (374-430)||(6440394-6440450)
[»] chr3 (2 HSPs)
chr3 (374-446)||(4973298-4973370)
chr3 (374-430)||(16074926-16074982)
[»] chr1 (1 HSPs)
chr1 (374-435)||(46546413-46546474)
[»] chr5 (2 HSPs)
chr5 (57-97)||(5525011-5525051)
chr5 (297-349)||(11236662-11236714)
[»] scaffold0153 (1 HSPs)
scaffold0153 (392-439)||(25574-25621)
[»] chr2 (1 HSPs)
chr2 (395-430)||(25342815-25342850)
[»] chr8 (1 HSPs)
chr8 (397-430)||(7661897-7661930)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 142 - 349
Target Start/End: Original strand, 637557 - 637766
Alignment:
Q  142 acatttagaaagtgaattcattttttagtggcacttcacttgatataaatcaaacggtatgaacaaaaatgnnnnnnnnnctgaattgaatcaacacaa- 240  Q
    ||||||||||| |||||||||||||| |||||||||||| | |||||||||| | |||||||| |||||||         |||||||||||||||||||     
T  637557 acatttagaaaatgaattcatttttttgtggcacttcacctaatataaatcacaaggtatgaataaaaatgaaacaaaaactgaattgaatcaacacaaa 637656  T
Q  241 -ctaaattgaaacaaaattagacttacacttgttgtgattgtaaggccctcttgaacacttcacctgagatttaaacaaataatatagagttatgaagtt 339  Q
     |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  637657 actaaattgaagcaaaattagacttacatttgttgtgattgtaaggcccttttgaacacttcacctgagatttaaacaaaaaatatagagttatgaagtt 637756  T
Q  340 atgaaattag 349  Q
    ||||||||||    
T  637757 atgaaattag 637766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 8150484 - 8150412
Alignment:
Q  374 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttactttggcttagagtgag 446  Q
    ||||||||||||||  ||| | |||||||||||||| ||||||||||||||| |||| ||| | |||||||||    
T  8150484 aaccctaaaacaagacattggtgaaggaatgagaaactagagaatcaattggattaccttgacgtagagtgag 8150412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 636998 - 637038
Alignment:
Q  57 ctataacaaaataatcattgaaccattaatctcaaatctaa 97  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  636998 ctataacaaaataatcattcagccattaatctcaaatctaa 637038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 4132602 - 4132647
Alignment:
Q  377 cctaaaacaagcaattagagaaggaatgagaaattagagaatcaat 422  Q
    |||| ||||||||||| ||||||||| |||||||||||| ||||||    
T  4132602 cctacaacaagcaattggagaaggaaggagaaattagagcatcaat 4132647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 16497835 - 16497887
Alignment:
Q  391 ttagagaaggaat--gagaaattagagaatcaattggcttactttggcttaga 441  Q
    |||||||||||||  ||||||||||||||| ||||||||||| || |||||||    
T  16497835 ttagagaaggaattggagaaattagagaataaattggcttacctttgcttaga 16497887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 16517303 - 16517340
Alignment:
Q  404 gagaaattagagaatcaattggcttactttggcttaga 441  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  16517303 gagaaattagagaatgaattggcttaccttggcttaga 16517340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 19816178 - 19816234
Alignment:
Q  374 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttac 430  Q
    ||||||||||||| ||||| ||||||||| || ||||| ||||||  ||||||||||    
T  19816178 aaccctaaaacaaccaattggagaaggaaggaaaaattggagaatacattggcttac 19816234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 378 - 447
Target Start/End: Complemental strand, 29657780 - 29657711
Alignment:
Q  378 ctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttactttggcttagagtgaga 447  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29657780 ctaaagcaagcaattggagaaggaatgagaaattagagaatcaattggcttaccttggcttagagtgaga 29657711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 30254883 - 30254988
Alignment:
Q  244 aattgaaacaaaattagacttacacttgttgtgattgtaaggccctcttgaacacttcacctgagatttaaacaaataatatagagttatgaagttatga 343  Q
    |||||||  ||||| ||||||||||||| ||||||||||| | ||||||||  || |||||||||||||||||||| |||| |  | ||||||||||| |    
T  30254883 aattgaagtaaaatcagacttacacttggtgtgattgtaaaggcctcttgagtacatcacctgagatttaaacaaaaaatagaatgatatgaagttataa 30254982  T
Q  344 aattag 349  Q
    ||||||    
T  30254983 aattag 30254988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 55005900 - 55005828
Alignment:
Q  374 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttactttggcttagagtgag 446  Q
    |||||||||||||| |||| |||| |||| ||||||||||| ||| ||||||||||| |||||||||||||||    
T  55005900 aaccctaaaacaagaaattggagatggaaggagaaattagaaaatgaattggcttaccttggcttagagtgag 55005828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 439
Target Start/End: Original strand, 21496192 - 21496257
Alignment:
Q  374 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttactttggctta 439  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  21496192 aaccctaaaacaagcaattggagaatgaatgagaaattagagaatcagttggcttaccttggctta 21496257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 6440394 - 6440450
Alignment:
Q  374 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttac 430  Q
    ||||||||||||||||||| ||||||||| |||| ||| ||||||||| ||||||||    
T  6440394 aaccctaaaacaagcaattggagaaggaaagagagattggagaatcaactggcttac 6440450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 4973370 - 4973298
Alignment:
Q  374 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttactttggcttagagtgag 446  Q
    ||||||||||||||||||| || || ||||||||||||||||||| ||||||||||| ||| || ||||||||    
T  4973370 aaccctaaaacaagcaattggaaaatgaatgagaaattagagaattaattggcttaccttgactaagagtgag 4973298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 16074926 - 16074982
Alignment:
Q  374 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttac 430  Q
    ||||||||||||| ||||| ||||||||| || ||||| ||||||| || |||||||    
T  16074926 aaccctaaaacaatcaattggagaaggaacgaaaaattggagaatcgatgggcttac 16074982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 46546474 - 46546413
Alignment:
Q  374 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttactttgg 435  Q
    ||||| ||||||||||||| ||||| ||||||||||||| ||||||| ||| ||||| ||||    
T  46546474 aacccgaaaacaagcaattggagaatgaatgagaaattaaagaatcagttgacttaccttgg 46546413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 5525051 - 5525011
Alignment:
Q  57 ctataacaaaataatcattgaaccattaatctcaaatctaa 97  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  5525051 ctataacaaaataaacattcaaccattaatctcaaatctaa 5525011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 11236714 - 11236662
Alignment:
Q  297 acttcacctgagatttaaacaaataatatagagttatgaagttatgaaattag 349  Q
    ||||||||||||| | |||||||||||| |||| | ||||||||| |||||||    
T  11236714 acttcacctgagaatgaaacaaataatagagagatgtgaagttataaaattag 11236662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 439
Target Start/End: Complemental strand, 25621 - 25574
Alignment:
Q  392 tagagaaggaatgagaaattagagaatcaattggcttactttggctta 439  Q
    |||||||| ||||||||||| |||||||||||||||||| || |||||    
T  25621 tagagaagaaatgagaaattggagaatcaattggcttaccttagctta 25574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 430
Target Start/End: Original strand, 25342815 - 25342850
Alignment:
Q  395 agaaggaatgagaaattagagaatcaattggcttac 430  Q
    |||||||||||||||||||||||| |||||||||||    
T  25342815 agaaggaatgagaaattagagaatgaattggcttac 25342850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 430
Target Start/End: Original strand, 7661897 - 7661930
Alignment:
Q  397 aaggaatgagaaattagagaatcaattggcttac 430  Q
    |||||| |||||||||||||||||||||||||||    
T  7661897 aaggaaggagaaattagagaatcaattggcttac 7661930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University