View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14138_high_17 (Length: 401)
Name: NF14138_high_17
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 6610364 - 6610181
Alignment:
| Q |
50 |
cccttcacacaacggtgggaagataaaggaaaataccaatcatagaatccaaacaatgaaatatcatcaagattaaagaaaattcttaactgccacacaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6610364 |
cccttcacacaacggtgggaagataaaggaaaataccaatcatagaatccaaacaatgaaatatcatcaagattaaagaaaattcttaactgccacacaa |
6610265 |
T |
|
| Q |
150 |
aatcataaaaccaaactatgcactatactgtttttaatattctcatatactgcatcatcttgccacttagagcaattgtttaac |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6610264 |
aatcataaaaccaaactatgcactatactgtttttaatattctcatatactgcatcatcttgccacttagagcaattgtttaac |
6610181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 232 - 396
Target Start/End: Complemental strand, 6610142 - 6609981
Alignment:
| Q |
232 |
acaaaggacaattatagtggctctgccactc--aataaaaactattgtaacaactaacaagtgnnnnnnnnnnnnnnnnnnnctataaattatttcagct |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6610142 |
acaaaggacaattatagtggctctgccactctcaataaaaactattgtaacaactaacaagtgttttttttttcttt-----ctataaattatttcagct |
6610048 |
T |
|
| Q |
330 |
tacagcttattgtcacacacaattctaattatgtttgttaaactcaacaaattttaacttccctttg |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6610047 |
tacagcttattgtcacacacaattctaattatgtttgttaaactcaacaaattttaacttccctttg |
6609981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 6602588 - 6602531
Alignment:
| Q |
235 |
aaggacaattatagtggctctgccactcaataaaaactattgtaacaactaacaagtg |
292 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
6602588 |
aaggacaatcatagtggctctgccactctataaaaactatgttaacaattaacaagtg |
6602531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 367
Target Start/End: Complemental strand, 6602517 - 6602462
Alignment:
| Q |
312 |
ctataaattatttcagcttacagcttattgtcacacacaattctaattatgtttgt |
367 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| | ||||||||| |||||| |
|
|
| T |
6602517 |
ctataaattgtttcagcttacaacttattgtcacacaaagttctaattaagtttgt |
6602462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University