View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_high_18 (Length: 397)
Name: NF14138_high_18
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 33249227 - 33249595
Alignment:
| Q |
17 |
atagtgttccacagtaactttgtaaggattcatatctatatgcgtgctattctcttcaacgacaataagacccctacctcctccatgaaagaaaatagac |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33249227 |
atagtgtttcacagtaactttgtaaggattcatatctatatgcgtgctattctcttcaacgacaataagacccctacctcctccatgaaagaaaatagac |
33249326 |
T |
|
| Q |
117 |
gtctttgtaacgaatccacgactatcatgtttctcagtttgaatcattgtatttgtatcagaaacttgtcttatagattcgaagtcaattttgttgagta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33249327 |
gtctttgtaacgaatccacgactatcatgtttctcagtttgaatcattgtatttgtatcagaaacttgtcttatagattcgaagtcaattttgttgagta |
33249426 |
T |
|
| Q |
217 |
gatcattttcagctttatctataaagaaaatgataagttcacttctgtaccttctatcaaaaaattggagtcttaaaccttgaaccctagcatctctatc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33249427 |
gatcattttcagctttatctataaagaaaatgataagttcacttctgtaccttctatcaaaaaattggagtcttaaaccttgaaccctaccatctctatc |
33249526 |
T |
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| Q |
317 |
aaattctctatttaagaggagactaacaaaagagctttcaatgatgtatttcacttgccaacactccct |
385 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33249527 |
aaattctctatttaagaggagattaacaaaagagctttcaatgatgtatttcacttgccaacactccct |
33249595 |
T |
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