View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_high_21 (Length: 379)
Name: NF14138_high_21
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_high_21 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 51808859 - 51808502
Alignment:
| Q |
19 |
ttaataccatttcaaagttcttgaaagcatgcacataataagccgcaagtaacagcctgaaacttaaacttcttctaatagttttttctatctttctatt |
118 |
Q |
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| T |
51808859 |
ttaataccatttcaaagttcttgaaagcatgcacataataagccgcaagtaacagcctgaaactaaaacttct---aatagttttttctatctttctatt |
51808763 |
T |
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| Q |
119 |
tacattgctttccatcttcttttctaccataaaaataatctcccttcattgacctcaaaatagacctctctgttgatgaatgaatactttctgccgatac |
218 |
Q |
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| T |
51808762 |
tacattgctttccatcttcttttctaccataacaataatctcccttcattcacctcaaaatagacctctctgttgatgaatgaatactttctgccgatac |
51808663 |
T |
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| Q |
219 |
ggtccctatactaacagtcacggcatggggttttgttaaaaagcacgcgccgaatgatctcttgcatcaacaactttatcaacaatatgttgacagcaaa |
318 |
Q |
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| T |
51808662 |
ggtccctatactaacagtcatggcatggggttttgttaaagagcacgcgccgaatgatctcttgcatcaataactttatcaacaatatgttgacagcaaa |
51808563 |
T |
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| Q |
319 |
gtttgcatctgatacgatatgaatgaaccgtgtgcatctattttcaacggtcaatctcagg |
379 |
Q |
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| T |
51808562 |
atttgcatctgatacgatatgaatgaaccatgtgcatctattttcaacggtcaatctcagg |
51808502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 51804713 - 51804639
Alignment:
| Q |
253 |
gttaaaaagcacgcgccgaatgatctcttgcatcaacaactttatcaacaatatgttgacagcaaagtttgcatc |
327 |
Q |
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| T |
51804713 |
gttacaaagcacatgccaaatgatctcttgcattaacaactttatcaacaatatgttgacagccaagtttacatc |
51804639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 51773195 - 51773139
Alignment:
| Q |
258 |
aaagcacgcgccgaatgatctcttgcatcaacaactttatcaacaatatgttgacag |
314 |
Q |
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| T |
51773195 |
aaagcacgcgtcaaatgatctcgtttatccacaactttatcaacaatatgttgacag |
51773139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 51804852 - 51804794
Alignment:
| Q |
109 |
tctttctatttacattgctttccatcttcttttctaccataaaaataatctcccttcatt |
168 |
Q |
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| T |
51804852 |
tctttctatttacttttctttccatcct-ttttcaaccataacaataatctcccttcatt |
51804794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 51773259 - 51773201
Alignment:
| Q |
109 |
tctttctatttacattgctttccatcttcttttctaccataaaaataatctcccttcat |
167 |
Q |
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| T |
51773259 |
tctttctatttacttctccttccatcttgttttctaccataaaaataacctcctttcat |
51773201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 51790411 - 51790337
Alignment:
| Q |
271 |
aatgatctcttgcatcaacaactttatcaacaatatgttgacagcaaagtttgcatctgatacgatatgaatgaa |
345 |
Q |
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| T |
51790411 |
aatgatttcttgcatctactactttatcaacaatatgttgaaagccatgtctgcatccgtgccgatatgaatgaa |
51790337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 51780811 - 51780779
Alignment:
| Q |
283 |
catcaacaactttatcaacaatatgttgacagc |
315 |
Q |
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| T |
51780811 |
catccacaactttatcaacaatatgttgacagc |
51780779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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