View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_high_24 (Length: 363)
Name: NF14138_high_24
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 11898427 - 11898083
Alignment:
| Q |
1 |
gatgataagggcggattgaaaaggctcaaggtaccnnnnnnnttgtctagtgtgtaatataatatgactgataattcataaagaattaacggcaaaaaat |
100 |
Q |
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| T |
11898427 |
gatgataagggcggattgaaaaggctcaaggtaccaaaaaaattgtctagtgtgtaatataatatgactgataattcataaagaattgacggcaaaaaat |
11898328 |
T |
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| Q |
101 |
tcgagcaaaaatgacacaagacaaataacggagaaaataaattaatgggttgtctcccgttcaatgcgtgttttacatcttgaacatggagaataagtct |
200 |
Q |
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| T |
11898327 |
tcgagcaaaaatgacacaagacaaataacggagaaaataaattaatgggttgtctctcgttcaatgcgtgttttacatcttgaacatggagaataagtct |
11898228 |
T |
|
| Q |
201 |
atgttgtgcccttgaacctcttcaaagcaggttcatcttcttcaactttcatttcccggatgcaatctttaacatgcttcagtttgtgtcgattcatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11898227 |
atgttgtgcccttgaacctcttcaaagcaggttcatcttcttcaactttcattttccggatgcaatctttaacatgcttcagtttgtgtcgattcacctt |
11898128 |
T |
|
| Q |
301 |
agcatgccatttcatattgtcccagatctccacgagactacatac |
345 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11898127 |
agcatgccatttgatattgtcccagatctccacgagactacatac |
11898083 |
T |
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